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autophagy-like protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818624, updated on 18-Sep-2024

Summary

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Official Full Name
autophagy-like protein
Primary source
TAIR:AT2G40316
Locus tag
AT2G40316
See related
Araport:AT2G40316
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT2G40313; T7M7.21; T7M7_21
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Genomic context

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Location:
chromosome: 2
Exon count:
11
Sequence:
Chromosome: 2; NC_003071.7 (16836104..16839446)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Eukaryotic translation initiation factor 2 subunit 1 Neighboring gene ferritin 4 Neighboring gene Pectin lyase-like superfamily protein Neighboring gene TRICHOME BIREFRINGENCE-LIKE 33 Neighboring gene PYR1-like 6

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084560.1
NM_129591.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
autophagy-like protein
NP_001078029.1
  • FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 135 Blast hits to 135 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 63; Plants - 31; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
NP_181562.4
  • FUNCTIONS IN: molecular_function unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Autophagy-related protein 27 (InterPro:IPR018939); Has 138 Blast hits to 138 proteins in 57 species: Archae - 0; Bacteria - 0; Metazoa - 32; Fungi - 62; Plants - 33; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16836104..16839446
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336828.1 → NP_001323518.1  autophagy-like protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q58FY5, Q84RK0

  2. NM_129591.5 → NP_181562.4  autophagy-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181562.4

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VYX3, A0A5S9X5P9, Q4PL95
    Conserved Domains (1) summary
    pfam09451
    Location:131 → 263
    ATG27; Autophagy-related protein 27

  3. NM_001084560.1 → NP_001078029.1  autophagy-like protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078029.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IH20, Q4PL94
    Conserved Domains (1) summary
    pfam09451
    Location:45 → 182
    ATG27; Autophagy-related protein 27
Nucleotide Protein
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