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JAL22 jacalin-related lectin 22 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818516, updated on 18-Sep-2024

Summary

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Official Symbol
JAL22
Official Full Name
jacalin-related lectin 22
Primary source
TAIR:AT2G39310
Locus tag
AT2G39310
See related
Araport:AT2G39310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
jacalin-related lectin 22; T16B24.5; T16B24_5
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Genomic context

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See JAL22 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (16414034..16416845, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene phosphatidylglycerolphosphate synthase 1 Neighboring gene CAP-gly domain linker Neighboring gene Cysteine proteinases superfamily protein Neighboring gene jacalin-related lectin 23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Post-transcriptional control of GRF transcription factors by microRNA miR396 and GIF co-activator affects leaf size and longevity. Debernardi JM, et al. Plant J, 2014 Aug. PMID 24888433
  2. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  3. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
  5. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084552.1
NM_001161092.1
NM_001336765.1
NM_129488.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
jacalin-related lectin 22
NP_001078021.1
  • jacalin-related lectin 22 (JAL22); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 23 (TAIR:AT2G39330.1); Has 1806 Blast hits to 711 proteins in 43 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 3; Plants - 1785; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
NP_001154564.1
  • jacalin-related lectin 22; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, LP.12 twelve leaves visible, D bilateral stage; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 23 (TAIR:AT2G39330.1); Has 2014 Blast hits to 748 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 5; Plants - 1992; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
NP_181463.1
  • jacalin-related lectin 22 (JAL22); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin-related lectin 23 (TAIR:AT2G39330.1); Has 2014 Blast hits to 748 proteins in 43 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 5; Plants - 1992; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    16414034..16416845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129488.4 → NP_181463.1  jacalin-related lectin 22 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181463.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MR44, O80950
    UniProtKB/TrEMBL
    A0A5S9X5D0, A0A654F1K0
    Conserved Domains (1) summary
    pfam01419
    Location:322 → 453
    Jacalin; Jacalin-like lectin domain

  2. NM_001336765.1 → NP_001323620.1  jacalin-related lectin 22 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MR44, O80950
    UniProtKB/TrEMBL
    A0A5S9X5D0, A0A654F1K0
    Conserved Domains (1) summary
    pfam01419
    Location:322 → 453
    Jacalin; Jacalin-like lectin domain

  3. NM_001084552.1 → NP_001078021.1  jacalin-related lectin 22 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001078021.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9X5D0
    Conserved Domains (1) summary
    pfam01419
    Location:292 → 423
    Jacalin; Jacalin-like lectin domain

  4. NM_001161092.1 → NP_001154564.1  jacalin-related lectin 22 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154564.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A8MR44, O80950
    UniProtKB/TrEMBL
    A0A5S9X5D0, A0A654F1K0
    Conserved Domains (1) summary
    pfam01419
    Location:322 → 453
    Jacalin; Jacalin-like lectin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80950.1

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