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Tgfbr2 transforming growth factor, beta receptor 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 81810, updated on 28-Oct-2024

Summary

Official Symbol
Tgfbr2provided by RGD
Official Full Name
transforming growth factor, beta receptor 2provided by RGD
Primary source
RGD:69651
See related
EnsemblRapid:ENSRNOG00000013265 AllianceGenome:RGD:69651
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Tgfbr2T; TGF-beta 2
Summary
Enables mitogen-activated protein kinase kinase kinase binding activity and transforming growth factor beta receptor activity, type II. Involved in several processes, including cellular response to acetaldehyde; negative regulation of cardiac muscle cell proliferation; and transforming growth factor beta receptor signaling pathway. Located in caveola and cell surface. Used to study membranoproliferative glomerulonephritis. Biomarker of artery disease (multiple); hepatobiliary system cancer (multiple); kidney disease; pulmonary fibrosis; and type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in several diseases, including Loeys-Dietz syndrome 2; Lynch syndrome (multiple); Marfan syndrome; gastrointestinal system cancer (multiple); and mismatch repair cancer syndrome. Orthologous to human TGFBR2 (transforming growth factor beta receptor 2). [provided by Alliance of Genome Resources, Oct 2024]
Expression
Biased expression in Lung (RPKM 782.6), Adrenal (RPKM 511.9) and 8 other tissues See more
Orthologs
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Genomic context

See Tgfbr2 in Genome Data Viewer
Location:
8q32
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (124672677..124761741, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (115794537..115883615, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (124310288..124399345, complement)

Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094283 Neighboring gene glutamate decarboxylase-like 1 Neighboring gene uncharacterized LOC120094284 Neighboring gene uncharacterized LOC103690469

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 
enables SMAD binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables SMAD binding IEA
Inferred from Electronic Annotation
more info
 
enables SMAD binding ISO
Inferred from Sequence Orthology
more info
 
enables activin binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables activin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables glycosaminoglycan binding IEA
Inferred from Electronic Annotation
more info
 
enables glycosaminoglycan binding ISO
Inferred from Sequence Orthology
more info
 
enables kinase activator activity IEA
Inferred from Electronic Annotation
more info
 
enables kinase activator activity ISO
Inferred from Sequence Orthology
more info
 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 
enables mitogen-activated protein kinase kinase kinase binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables molecular adaptor activity ISO
Inferred from Sequence Orthology
more info
 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables protein homodimerization activity TAS
Traceable Author Statement
more info
PubMed 
enables protein-containing complex binding TAS
Traceable Author Statement
more info
PubMed 
enables transforming growth factor beta binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transforming growth factor beta binding IEA
Inferred from Electronic Annotation
more info
 
contributes_to transforming growth factor beta binding ISO
Inferred from Sequence Orthology
more info
 
enables transforming growth factor beta binding ISO
Inferred from Sequence Orthology
more info
 
enables transforming growth factor beta receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables transforming growth factor beta receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables transforming growth factor beta receptor activity, type II IEA
Inferred from Electronic Annotation
more info
 
enables transforming growth factor beta receptor activity, type II IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables transforming growth factor beta receptor activity, type II ISO
Inferred from Sequence Orthology
more info
 
enables transforming growth factor beta receptor activity, type II TAS
Traceable Author Statement
more info
PubMed 
enables transmembrane receptor protein serine/threonine kinase activity ISO
Inferred from Sequence Orthology
more info
 
enables type I transforming growth factor beta receptor binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables type I transforming growth factor beta receptor binding IEA
Inferred from Electronic Annotation
more info
 
enables type I transforming growth factor beta receptor binding ISO
Inferred from Sequence Orthology
more info
 
enables type III transforming growth factor beta receptor binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in Langerhans cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within Langerhans cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in Notch signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within Notch signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within SMAD protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in activin receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in animal organ morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in animal organ regeneration IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in aorta morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in aorta morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in aortic valve morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in aortic valve morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in artery morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in atrioventricular valve morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 
involved_in brain development ISO
Inferred from Sequence Orthology
more info
 
involved_in branching involved in blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within branching involved in blood vessel morphogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within bronchus development ISO
Inferred from Sequence Orthology
more info
 
involved_in bronchus morphogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within bronchus morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in cardiac left ventricle morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in cardiac left ventricle morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in cartilage development ISO
Inferred from Sequence Orthology
more info
 
NOT involved_in cell proliferation involved in endocardial cushion morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to acetaldehyde IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in cellular response to growth factor stimulus IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in digestive tract development IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in embryo implantation IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in embryonic cranial skeleton morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in embryonic cranial skeleton morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in embryonic hemopoiesis IEA
Inferred from Electronic Annotation
more info
 
involved_in embryonic hemopoiesis ISO
Inferred from Sequence Orthology
more info
 
involved_in endocardial cushion fusion IEA
Inferred from Electronic Annotation
more info
 
involved_in endocardial cushion fusion ISO
Inferred from Sequence Orthology
more info
 
involved_in epithelial to mesenchymal transition IEA
Inferred from Electronic Annotation
more info
 
involved_in epithelial to mesenchymal transition ISO
Inferred from Sequence Orthology
more info
 
involved_in gastrulation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within gastrulation ISO
Inferred from Sequence Orthology
more info
 
involved_in growth plate cartilage chondrocyte growth IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within growth plate cartilage chondrocyte growth ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within growth plate cartilage development ISO
Inferred from Sequence Orthology
more info
 
involved_in heart development IBA
Inferred from Biological aspect of Ancestor
more info
 
acts_upstream_of_or_within heart development ISO
Inferred from Sequence Orthology
more info
 
involved_in heart looping IEA
Inferred from Electronic Annotation
more info
 
involved_in heart looping ISO
Inferred from Sequence Orthology
more info
 
involved_in in utero embryonic development IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within in utero embryonic development ISO
Inferred from Sequence Orthology
more info
 
involved_in inferior endocardial cushion morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in inferior endocardial cushion morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in lens development in camera-type eye IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lens development in camera-type eye ISO
Inferred from Sequence Orthology
more info
 
involved_in lens fiber cell apoptotic process IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lens fiber cell apoptotic process ISO
Inferred from Sequence Orthology
more info
 
involved_in lung development IEP
Inferred from Expression Pattern
more info
PubMed 
acts_upstream_of_or_within lung development ISO
Inferred from Sequence Orthology
more info
 
involved_in lung lobe morphogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within lung lobe morphogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within lung morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in mammary gland morphogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within mammary gland morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in membranous septum morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in membranous septum morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in miRNA transport IEA
Inferred from Electronic Annotation
more info
 
involved_in miRNA transport ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of cardiac muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in negative regulation of cell population proliferation IGI
Inferred from Genetic Interaction
more info
PubMed 
involved_in negative regulation of cell population proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in outflow tract morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in outflow tract septum morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in outflow tract septum morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in pattern specification process IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in positive regulation of B cell tolerance induction IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of B cell tolerance induction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of CD4-positive, alpha-beta T cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of CD4-positive, alpha-beta T cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of NK T cell differentiation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of NK T cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of SMAD protein signal transduction IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of SMAD protein signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of T cell tolerance induction IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of T cell tolerance induction ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of angiogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of epithelial cell migration IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of epithelial cell migration ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of epithelial to mesenchymal transition ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of mesenchymal cell proliferation IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of mesenchymal cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of reactive oxygen species metabolic process IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of reactive oxygen species metabolic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of skeletal muscle tissue regeneration IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in positive regulation of smooth muscle cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of tolerance induction to self antigen IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within positive regulation of tolerance induction to self antigen ISO
Inferred from Sequence Orthology
more info
 
involved_in protein phosphorylation IEA
Inferred from Electronic Annotation
more info
 
involved_in receptor-mediated endocytosis IDA
Inferred from Direct Assay
more info
PubMed 
acts_upstream_of_or_within regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of stem cell differentiation IEA
Inferred from Electronic Annotation
more info
 
involved_in regulation of stem cell differentiation ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of stem cell proliferation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within regulation of stem cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in response to cholesterol IEA
Inferred from Electronic Annotation
more info
 
involved_in response to cholesterol ISO
Inferred from Sequence Orthology
more info
 
involved_in response to estrogen IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to glucose IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to hypoxia IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to hypoxia TAS
Traceable Author Statement
more info
PubMed 
involved_in response to mechanical stimulus IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to nutrient IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to organic cyclic compound IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to steroid hormone IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in response to xenobiotic stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in response to xenobiotic stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in roof of mouth development ISO
Inferred from Sequence Orthology
more info
 
involved_in secondary palate development IEA
Inferred from Electronic Annotation
more info
 
involved_in secondary palate development ISO
Inferred from Sequence Orthology
more info
 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within smoothened signaling pathway ISO
Inferred from Sequence Orthology
more info
 
NOT involved_in superior endocardial cushion morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in trachea formation IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within trachea formation ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within trachea morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in transforming growth factor beta receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 
involved_in transforming growth factor beta receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within transforming growth factor beta receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in transforming growth factor beta receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in transforming growth factor beta receptor signaling pathway TAS
Traceable Author Statement
more info
PubMed 
involved_in tricuspid valve morphogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in tricuspid valve morphogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in vasculogenesis IEA
Inferred from Electronic Annotation
more info
 
involved_in vasculogenesis IEP
Inferred from Expression Pattern
more info
PubMed 
involved_in vasculogenesis ISO
Inferred from Sequence Orthology
more info
 
involved_in ventricular septum morphogenesis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in caveola IDA
Inferred from Direct Assay
more info
PubMed 
located_in caveola IEA
Inferred from Electronic Annotation
more info
 
located_in caveola ISO
Inferred from Sequence Orthology
more info
 
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
 
located_in external side of plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in extracellular space ISO
Inferred from Sequence Orthology
more info
 
located_in membrane ISO
Inferred from Sequence Orthology
more info
 
located_in membrane raft IDA
Inferred from Direct Assay
more info
PubMed 
located_in membrane raft ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
part_of receptor complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of receptor complex ISO
Inferred from Sequence Orthology
more info
 
part_of transforming growth factor beta ligand-receptor complex IEA
Inferred from Electronic Annotation
more info
 
part_of transforming growth factor beta ligand-receptor complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
TGF-beta receptor type-2
Names
TGF-beta receptor type II
TGF-beta type II receptor
TGFR-2
tbetaR-II
transforming growth factor beta receptor type II
transforming growth factor, beta receptor II
transforming growth factor, beta receptor IIT
transforming growth factor-b type II receptor
transforming growth factor-beta type II receptor
NP_112394.4
XP_008764912.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031132.4NP_112394.4  TGF-beta receptor type-2 precursor

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000008
    UniProtKB/Swiss-Prot
    P38438
    UniProtKB/TrEMBL
    D0VED2
    Related
    ENSRNOP00000093892.1, ENSRNOT00000116107.2
    Conserved Domains (2) summary
    cd14055
    Location:248542
    STKc_TGFbR2_like; Catalytic domain of the Serine/Threonine Kinase, Transforming Growth Factor beta Type II Receptor
    pfam08917
    Location:49152
    ecTbetaR2; Transforming growth factor beta receptor 2 ectodomain

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086026.1 Reference GRCr8

    Range
    124672677..124761741 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008766690.2XP_008764912.1  TGF-beta receptor type-2 isoform X1

    UniProtKB/TrEMBL
    A0A8L2QK15
    Related
    ENSRNOP00000035501.4, ENSRNOT00000037883.6
    Conserved Domains (3) summary
    smart00221
    Location:269566
    STYKc; Protein kinase; unclassified specificity
    cd14055
    Location:273567
    STKc_TGFbR2_like; Catalytic domain of the Serine/Threonine Kinase, Transforming Growth Factor beta Type II Receptor
    pfam08917
    Location:74177
    ecTbetaR2; Transforming growth factor beta receptor 2 ectodomain