GPS1 geranyl diphosphate synthase 1 [Arabidopsis thaliana (thale cress)] - Gene

Summary

Go to the top of the page Help

Official Symbol: GPS1
Official Full Name: geranyl diphosphate synthase 1
Primary source: TAIR:AT2G34630
Locus tag: AT2G34630
See related: Araport:AT2G34630
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: geranyl diphosphate synthase 1; GERANYLPYROPHOSPHATE SYNTHASE; GPPS; T31E10.3; T31E10_3
Summary: Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help

See GPS1 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 11

Sequence:: Chromosome: 2; NC_003071.7 (14578444..14581856)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phylogenetic analyses revealed that At2g34630 is the only Arabidopsis trans-long-chain prenyl diphosphate synthase that clusters with the Coq1 orthologs involved in the biosynthesis of ubiquinone in other eukaryotes.
Title: Gene network reconstruction identifies the authentic trans-prenyl diphosphate synthase that makes the solanesyl moiety of ubiquinone-9 in Arabidopsis.
A novel prenyltransferases from Arabidopsis thaliana is identified as a trans-type polyprenyl pyrophosphate synthase which is involved in the synthesis of multiple medium/long-chain products. [AtPPPS]
Title: Structure and mechanism of an Arabidopsis medium/long-chain-length prenyl pyrophosphate synthase.

Submit: New GeneRIF Correction

Pathways from PubChem

Go to the top of the page

General gene information

Go to the top of the page Help

Homology

Orthologs from OrthoDB

NM_001036406.3

Supported by ESTs:

NM_179903.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables all-trans-nonaprenyl-diphosphate synthase (geranylgeranyl-diphosphate specific) activity	IEA Inferred from Electronic Annotation more info
enables dimethylallyltranstransferase activity	IDA Inferred from Direct Assay more info	PubMed
enables dimethylallyltranstransferase activity	IGI Inferred from Genetic Interaction more info	PubMed
enables prenyltransferase activity	IDA Inferred from Direct Assay more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within embryo development ending in seed dormancy	IMP Inferred from Mutant Phenotype more info	PubMed
acts_upstream_of_or_within ubiquinone biosynthetic process	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in chloroplast	IDA Inferred from Direct Assay more info	PubMed
located_in chloroplast	ISM Inferred from Sequence Model more info
located_in mitochondrion	IDA Inferred from Direct Assay more info	PubMed
located_in mitochondrion	ISM Inferred from Sequence Model more info
located_in plastid	IDA Inferred from Direct Assay more info	PubMed

General protein information

Go to the top of the page Help

Preferred Names: geranyl diphosphate synthase 1

NP_001031483.1

geranyl diphosphate synthase 1 (GPS1); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NP_850234.1

geranyl diphosphate synthase 1 (GPS1); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 15732 Blast hits to 15728 proteins in 2900 species: Archae - 335; Bacteria - 9322; Metazoa - 401; Fungi - 471; Plants - 404; Viruses - 0; Other Eukaryotes - 4799 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

14578444..14581856

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001036406.3 → NP_001031483.1 geranyl diphosphate synthase 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001031483.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4IHY6, O64684, Q5HZ00, Q8RWM1, Q9FT89

UniProtKB/TrEMBL

A0A178VT82, A0A5S9X3X5

Conserved Domains (1) summary

PLN02890
Location:1 → 422

PLN02890; geranyl diphosphate synthase
NM_179903.3 → NP_850234.1 geranyl diphosphate synthase 1 [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_850234.1

Status: REVIEWED

UniProtKB/Swiss-Prot

Q5HZ00

Conserved Domains (1) summary

cl00210
Location:1 → 319

Isoprenoid_Biosyn_C1; Isoprenoid Biosynthesis enzymes, Class 1