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Transketolase family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 818024, updated on 18-Sep-2024

Summary

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Official Full Name
Transketolase family protein
Primary source
TAIR:AT2G34590
Locus tag
AT2G34590
See related
Araport:AT2G34590
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (14568802..14571143, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene cytomegalovirus UL139 protein Neighboring gene uncharacterized protein Neighboring gene jasmonate-zim-domain protein 7 Neighboring gene cotton fiber protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The homeodomain-leucine zipper ATHB23, a phytochrome B-interacting protein, is important for phytochrome B-mediated red light signaling. Choi H, et al. Physiol Plant, 2014 Feb. PMID 23964902
  2. A collection of Ds insertional mutants associated with defects in male gametophyte development and function in Arabidopsis thaliana. Boavida LC, et al. Genetics, 2009 Apr. PMID 19237690, Free PMC Article
  3. Proximity labeling of protein complexes and cell-type-specific organellar proteomes in Arabidopsis enabled by TurboID. Mair A, et al. Elife, 2019 Sep 19. PMID 31535972, Free PMC Article
  4. Redox Conformation-Specific Protein-Protein Interactions of the 2-Cysteine Peroxiredoxin in Arabidopsis. Liebthal M, et al. Antioxidants (Basel), 2020 Jun 11. PMID 32545358, Free PMC Article
  5. Proteomics of the chloroplast envelope membranes from Arabidopsis thaliana. Ferro M, et al. Mol Cell Proteomics, 2003 May. PMID 12766230

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_129013.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables pyruvate dehydrogenase (acetyl-transferring) activity IEA
Inferred from Electronic Annotation
more info
  
enables pyruvate dehydrogenase (acetyl-transferring) activity NAS
Non-traceable Author Statement
more info
  
enables zinc ion binding HDA PubMed 
Process Evidence Code Pubs
involved_in acetyl-CoA biosynthetic process from pyruvate IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within pollen tube development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in chloroplast envelope HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 

General protein information

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Preferred Names
Transketolase family protein
NP_181006.1
  • Transketolase family protein; FUNCTIONS IN: pyruvate dehydrogenase (acetyl-transferring) activity, zinc ion binding, transketolase activity; INVOLVED IN: pollen tube development; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Transketolase, C-terminal (InterPro:IPR005476), Transketolase-like, C-terminal (InterPro:IPR015941), Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II (InterPro:IPR009014), Transketolase-like, pyrimidine-binding domain (InterPro:IPR005475); BEST Arabidopsis thaliana protein match is: pyruvate dehydrogenase E1 beta (TAIR:AT1G30120.1); Has 14271 Blast hits to 14261 proteins in 2406 species: Archae - 196; Bacteria - 9106; Metazoa - 476; Fungi - 223; Plants - 259; Viruses - 0; Other Eukaryotes - 4011 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    14568802..14571143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_129013.3 → NP_181006.1  Transketolase family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_181006.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O64688, Q8LAI3
    UniProtKB/TrEMBL
    A0A178W125, A0A178WIN0, A0A5S9WD50, A0A5S9X422
    Conserved Domains (1) summary
    CHL00144
    Location:84 → 406
    odpB; pyruvate dehydrogenase E1 component beta subunit; Validated
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O64688.1

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