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AtIPCS3 Inositol phosphorylceramide synthase 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817501, updated on 18-Sep-2024

Summary

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Official Symbol
AtIPCS3
Official Full Name
Inositol phosphorylceramide synthase 3
Primary source
TAIR:AT2G29525
Locus tag
AT2G29525
See related
Araport:AT2G29525
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
Arabidopsis Inositol phosphorylceramide synthase 3
Summary
Inositol phosphorylceramide synthase
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Genomic context

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See AtIPCS3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Sequence:
Chromosome: 2; NC_003071.7 (12638284..12640820)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene hypothetical protein (DUF3527) Neighboring gene tRNA-Val Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Tim10/DDP family zinc finger protein Neighboring gene RNApolymerase 14 kDa subunit Neighboring gene tubulin beta-7 chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional analyses of differentially expressed isoforms of the Arabidopsis inositol phosphorylceramide synthase. Mina JG, et al. Plant Mol Biol, 2010 Jul. PMID 20309609
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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NM_001202704.1
NM_001336213.1
NM_179803.4
NM_201831.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables inositol phosphoceramide synthase activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables inositol phosphoceramide synthase activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables phosphotransferase activity, for other substituted phosphate groups IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within sphingolipid biosynthetic process IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Inositol phosphorylceramide synthase 3
NP_001189633.1
  • Arabidopsis Inositol phosphorylceramide synthase 3 (AtIPCS3); FUNCTIONS IN: inositol phosphoceramide synthase activity; INVOLVED IN: sphingolipid biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; BEST Arabidopsis thaliana protein match is: Arabidopsis Inositol phosphorylceramide synthase 1 (TAIR:AT3G54020.1).
NP_001318312.1
  • Arabidopsis Inositol phosphorylceramide synthase 3 (AtIPCS3); BEST Arabidopsis thaliana protein match is: Arabidopsis Inositol phosphorylceramide synthase 1 (TAIR:AT3G54020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_973560.1
  • Arabidopsis Inositol phosphorylceramide synthase 3 (AtIPCS3); BEST Arabidopsis thaliana protein match is: Arabidopsis Inositol phosphorylceramide synthase 1 (TAIR:AT3G54020.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12638284..12640820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336212.1 → NP_001318312.1  Inositol phosphorylceramide synthase 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IKQ0, Q56Y01, Q84RI9
    UniProtKB/TrEMBL
    A0A5S9X2K2, A0A7G2EEU9

  2. NM_001202704.1 → NP_001189633.1  Inositol phosphorylceramide synthase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189633.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IKQ0, Q56Y01, Q84RI9
    UniProtKB/TrEMBL
    A0A5S9X2K2, A0A7G2EEU9
    Conserved Domains (1) summary
    pfam14360
    Location:172 → 240
    PAP2_C; PAP2 superfamily C-terminal

  3. NM_201831.2 → NP_973560.1  Inositol phosphorylceramide synthase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973560.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VTJ6
    Conserved Domains (1) summary
    pfam14360
    Location:172 → 240
    PAP2_C; PAP2 superfamily C-terminal

  4. NM_179803.4 → NP_850134.2  Inositol phosphorylceramide synthase 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_850134.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IKQ0, Q56Y01, Q84RI9
    UniProtKB/TrEMBL
    A0A5S9X2K2, A0A7G2EEU9
    Conserved Domains (1) summary
    pfam14360
    Location:172 → 240
    PAP2_C; PAP2 superfamily C-terminal

  5. NM_001336213.1 → NP_001324648.1  Inositol phosphorylceramide synthase 3 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VV21, A0A1P8B0S8
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q56Y01.1

Gene LinkOut

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