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Pleckstrin homology (PH) and lipid-binding START domains-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817379, updated on 18-Sep-2024

Summary

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Official Full Name
Pleckstrin homology (PH) and lipid-binding START domains-containing protein
Primary source
TAIR:AT2G28320
Locus tag
AT2G28320
See related
Araport:AT2G28320
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T1B3.16; T1B3_16
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Genomic context

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Location:
chromosome: 2
Exon count:
21
Sequence:
Chromosome: 2; NC_003071.7 (12094621..12099644)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene trimethylguanosine synthase (DUF707) Neighboring gene Nucleotide/sugar transporter family protein Neighboring gene uncharacterized protein Neighboring gene GATA transcription factor 13

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Learning the lipid language of plant signalling. van Leeuwen W, et al. Trends Plant Sci, 2004 Aug. PMID 15358268
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

General gene information

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Homology

NM_128391.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables lipid binding IEA
Inferred from Electronic Annotation
more info
  
enables phosphatidylinositol binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Pleckstrin homology (PH) and lipid-binding START domains-containing protein
NP_180399.2
  • Pleckstrin homology (PH) and lipid-binding START domains-containing protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1336 (InterPro:IPR009769), Pleckstrin homology-type (InterPro:IPR011993), Lipid-binding START (InterPro:IPR002913), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: Pleckstrin homology (PH) and lipid-binding START domains-containing protein (TAIR:AT3G54800.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    12094621..12099644
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128391.3 → NP_180399.2  Pleckstrin homology (PH) and lipid-binding START domains-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180399.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNB6, F4IHT0
    Conserved Domains (1) summary
    PLN00188
    Location:14 → 733
    PLN00188; enhanced disease resistance protein (EDR2); Provisional
Nucleotide Protein
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