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Calcium-binding EF-hand family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817293, updated on 18-Sep-2024

Summary

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Official Full Name
Calcium-binding EF-hand family protein
Primary source
TAIR:AT2G27480
Locus tag
AT2G27480
See related
Araport:AT2G27480
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F10A12.16; F10A12_16
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (11746683..11748051)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene sec23/sec24 transport family protein Neighboring gene nuclear factor Y, subunit B11 Neighboring gene ncRNA Neighboring gene dephospho-CoA kinase family Neighboring gene miscRNA Neighboring gene Glycosyl hydrolase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001336117.1
NM_128308.6

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Calcium-binding EF-hand family protein
NP_180317.3
  • Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: stem; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT5G04170.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11746683..11748051
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128308.6 → NP_180317.3  Calcium-binding EF-hand family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180317.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    A2RVT7, Q0WPF4, Q9ZQH1
    UniProtKB/TrEMBL
    A0A5S9X209, A0A654EY54, A0A7G2EFK0
    Conserved Domains (1) summary
    cd16180
    Location:56 → 223
    EFh_PEF_Group_I; Penta-EF hand, calcium binding motifs, found in Group I PEF proteins

  2. NM_001336117.1 → NP_001325108.1  Calcium-binding EF-hand family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VZT2, A0A1P8B254
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZQH1.2

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