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Ubiquitin-associated/translation elongation factor EF1B protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817233, updated on 18-Sep-2024

Summary

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Official Full Name
Ubiquitin-associated/translation elongation factor EF1B protein
Primary source
TAIR:AT2G26920
Locus tag
AT2G26920
See related
Araport:AT2G26920
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12C20.4; F12C20_4
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (11488988..11491751)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Sodium Bile acid symporter family Neighboring gene pleiotropic drug resistance 4 Neighboring gene 4-(cytidine 5'-phospho)-2-C-methyl-D-erithritol kinase Neighboring gene C2H2-type zinc finger family protein Neighboring gene myb domain protein 104

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis Proteins AtNHR2A and AtNHR2B Are Multi-Functional Proteins Integrating Plant Immunity With Other Biological Processes. Singh R, et al. Front Plant Sci, 2020. PMID 32194606, Free PMC Article
  2. Mapping the signaling network of BIN2 kinase using TurboID-mediated biotin labeling and phosphoproteomics. Kim TW, et al. Plant Cell, 2023 Mar 15. PMID 36660928, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_128249.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ubiquitin-associated/translation elongation factor EF1B protein
NP_180260.1
  • Ubiquitin-associated/translation elongation factor EF1B protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated/translation elongation factor EF1B protein (TAIR:AT5G12120.1); Has 396 Blast hits to 387 proteins in 96 species: Archae - 0; Bacteria - 14; Metazoa - 132; Fungi - 65; Plants - 58; Viruses - 1; Other Eukaryotes - 126 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11488988..11491751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128249.5 → NP_180260.1  Ubiquitin-associated/translation elongation factor EF1B protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180260.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VX05, A0A5S9X1J2, A0A7G2ECQ2, O81015
    Conserved Domains (1) summary
    cl21463
    Location:158 → 194
    UBA_like_SF; UBA domain-like superfamily
Nucleotide Protein
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