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SEH soluble epoxide hydrolase [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817215, updated on 18-Sep-2024

Summary

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Official Symbol
SEH
Official Full Name
soluble epoxide hydrolase
Primary source
TAIR:AT2G26740
Locus tag
AT2G26740
See related
Araport:AT2G26740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSEH; EPOXIDE HYDROLASE; F18A8.11; F18A8_11; soluble epoxide hydrolase
Summary
Encodes a soluble epoxide hydrolase whose expression is induced by auxin and water stress.
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Genomic context

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See SEH in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Sequence:
Chromosome: 2; NC_003071.7 (11392849..11394363, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Cupredoxin superfamily protein Neighboring gene Leucine-rich repeat protein kinase family protein Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Cyclin B1;4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of an Arabidopsis cDNA for a soluble epoxide hydrolase gene that is inducible by auxin and water stress. Kiyosue T, et al. Plant J, 1994 Aug. PMID 7920716
  2. A proteomic strategy for global analysis of plant protein complexes. Aryal UK, et al. Plant Cell, 2014 Oct. PMID 25293756, Free PMC Article
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_128231.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables cis-stilbene-oxide hydrolase activity IEA
Inferred from Electronic Annotation
more info
  
enables epoxide hydrolase activity IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within response to auxin IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol HDA PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  
located_in peroxisome HDA PubMed 

General protein information

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Preferred Names
soluble epoxide hydrolase
NP_180242.1
  • soluble epoxide hydrolase (SEH); CONTAINS InterPro DOMAIN/s: Epoxide hydrolase-like (InterPro:IPR000639), Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT2G26750.1); Has 16813 Blast hits to 16796 proteins in 1664 species: Archae - 95; Bacteria - 12002; Metazoa - 658; Fungi - 513; Plants - 624; Viruses - 3; Other Eukaryotes - 2918 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11392849..11394363 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128231.3 → NP_180242.1  soluble epoxide hydrolase [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180242.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VUJ2, A0A7G2EFD3, Q42566
    Conserved Domains (1) summary
    COG0596
    Location:2 → 318
    MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]
Nucleotide Protein
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