U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

AT2G25980 Mannose-binding lectin superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817139, updated on 7-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
AT2G25980
Gene description
Mannose-binding lectin superfamily protein
Primary source
Araport:AT2G25980
Locus tag
AT2G25980
See related
TAIR:AT2G25980
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T19L18.21; T19L18_21
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See AT2G25980 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (11077438..11079968, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene KH domain-containing protein Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene zinc finger (C3HC4-type RING finger) family protein

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  2. Novel Aquaporin Regulatory Mechanisms Revealed by Interactomics. Bellati J, et al. Mol Cell Proteomics, 2016 Nov. PMID 27609422, Free PMC Article
  3. Arabidopsis plasmodesmal proteome. Fernandez-Calvino L, et al. PLoS One, 2011 Apr 20. PMID 21533090, Free PMC Article
  4. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

NM_128157.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
located_in plasmodesma HDA PubMed 

General protein information

Go to the top of the page Help
Preferred Names
Mannose-binding lectin superfamily protein
NP_180168.1
  • Mannose-binding lectin superfamily protein; CONTAINS InterPro DOMAIN/s: Mannose-binding lectin (InterPro:IPR001229); BEST Arabidopsis thaliana protein match is: jacalin lectin family protein (TAIR:AT1G33790.1); Has 1842 Blast hits to 680 proteins in 37 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 2; Plants - 1834; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    11077438..11079968 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001336032.1 → NP_001325173.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2D4

  2. NM_128157.4 → NP_180168.1  Mannose-binding lectin superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180168.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O80998
    UniProtKB/TrEMBL
    A0A178VQA5, A0A5S9X1R3, A0A654F177
    Conserved Domains (1) summary
    pfam01419
    Location:314 → 446
    Jacalin; Jacalin-like lectin domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O80998.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials
Tools