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ER membrane protein complex subunit-like protein (DUF2012) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817069, updated on 18-Sep-2024

Summary

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Official Full Name
ER membrane protein complex subunit-like protein (DUF2012)
Primary source
TAIR:AT2G25310
Locus tag
AT2G25310
See related
Araport:AT2G25310
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T22F11.10; T22F11_10
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (10777068..10779264, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Galactosyltransferase family protein Neighboring gene Putative membrane lipoprotein Neighboring gene ECA1 gametogenesis related family protein Neighboring gene TRAF-like family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Putative glycosyltransferases and other plant Golgi apparatus proteins are revealed by LOPIT proteomics. Nikolovski N, et al. Plant Physiol, 2012 Oct. PMID 22923678, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_128088.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in endoplasmic reticulum HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
ER membrane protein complex subunit-like protein (DUF2012)
NP_180103.2
  • FUNCTIONS IN: carbohydrate binding; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carbohydrate-binding-like fold (InterPro:IPR013784), Protein of unknown function DUF2012 (InterPro:IPR019008); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF2012) (TAIR:AT4G32130.1); Has 307 Blast hits to 307 proteins in 138 species: Archae - 0; Bacteria - 14; Metazoa - 141; Fungi - 68; Plants - 50; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10777068..10779264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128088.5 → NP_180103.2  ER membrane protein complex subunit-like protein (DUF2012) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180103.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VNP6, Q84JM6, Q9SIR2
    Conserved Domains (1) summary
    cl21470
    Location:60 → 158
    Peptidase_M14NE-CP-C_like; Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain
Nucleotide Protein
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