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COL3 CONSTANS-like 3 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 817016, updated on 18-Sep-2024

Summary

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Official Symbol
COL3
Official Full Name
CONSTANS-like 3
Primary source
TAIR:AT2G24790
Locus tag
AT2G24790
See related
Araport:AT2G24790
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATCOL3; B-box domain protein 4; BBX4; CONSTANS-like 3; F27A10.10
Summary
Positive regulator of photomorphogenesis that acts downstream of COP1 but can promote lateral root development independently of COP1 and also function as a daylength-sensitive regulator of shoot branching.
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Genomic context

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See COL3 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (10566836..10568145)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor 3 Neighboring gene uncharacterized protein Neighboring gene miscRNA Neighboring gene Peroxidase superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis CONSTANS-LIKE3 is a positive regulator of red light signaling and root growth. Datta S, et al. Plant Cell, 2006 Jan. PMID 16339850, Free PMC Article
  2. Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering. Tripathi P, et al. Proc Natl Acad Sci U S A, 2017 Jan 3. PMID 27999181, Free PMC Article
  3. Arabidopsis TOE proteins convey a photoperiodic signal to antagonize CONSTANS and regulate flowering time. Zhang B, et al. Genes Dev, 2015 May 1. PMID 25934507, Free PMC Article
  4. Identification of LOV KELCH PROTEIN2 (LKP2)-interacting factors that can recruit LKP2 to nuclear bodies. Fukamatsu Y, et al. Plant Cell Physiol, 2005 Aug. PMID 15937324
  5. Promoter-based integration in plant defense regulation. Li B, et al. Plant Physiol, 2014 Dec. PMID 25352272, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_128038.3
NM_201801.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transcription cis-regulatory region binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within red light signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of flower development IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of photomorphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
CONSTANS-like 3
NP_180052.1
  • CONSTANS-like 3 (COL3); CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 4 (TAIR:AT5G24930.1); Has 3343 Blast hits to 2491 proteins in 138 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 1; Plants - 3148; Viruses - 0; Other Eukaryotes - 192 (source: NCBI BLink).
NP_973530.1
  • CONSTANS-like 3 (COL3); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: CONSTANS-like 4 (TAIR:AT5G24930.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10566836..10568145
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_128038.3 → NP_180052.1  CONSTANS-like 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_180052.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7G9K6, Q8LDY3, Q9SK53
    UniProtKB/TrEMBL
    A0A178VTY8, A0A5S9X0W1, A0A654EVT8
    Conserved Domains (2) summary
    cd19821
    Location:7 → 50
    Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
    pfam06203
    Location:229 → 271
    CCT; CCT motif

  2. NM_201801.1 → NP_973530.1  CONSTANS-like 3 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_973530.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q3EBU4
    Conserved Domains (1) summary
    smart00336
    Location:46 → 93
    BBOX; B-Box-type zinc finger
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SK53.1

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