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LOW protein: F-box/kelch-repeat protein (DUF295) [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816959, updated on 18-Sep-2024

Summary

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Official Full Name
LOW protein: F-box/kelch-repeat protein (DUF295)
Primary source
TAIR:AT2G24250
Locus tag
AT2G24250
See related
Araport:AT2G24250
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F27D4.23
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (10313066..10314985, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene BTB/POZ domain with WD40/YVTN repeat-like protein Neighboring gene LOW protein: F-box/kelch-repeat protein Neighboring gene LJRHL1-like 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A comprehensive analysis of interaction and localization of Arabidopsis SKP1-like (ASK) and F-box (FBX) proteins. Kuroda H, et al. PLoS One, 2012. PMID 23166809, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001036330.2
NM_127986.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
LOW protein: F-box/kelch-repeat protein (DUF295)
NP_001031407.1
  • CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G64840.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_565565.1
  • CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT1G64840.1); Has 154 Blast hits to 151 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    10313066..10314985 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001036330.2 → NP_001031407.1  LOW protein: F-box/kelch-repeat protein (DUF295) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031407.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94C28, Q9ZUH0
    UniProtKB/TrEMBL
    A0A5S9X0Y8, A0A654EWT7, B9DHG3
    Conserved Domains (2) summary
    PLN03215
    Location:13 → 53
    PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
    pfam03478
    Location:282 → 327
    DUF295; Protein of unknown function (DUF295)

  2. NM_127986.2 → NP_565565.1  LOW protein: F-box/kelch-repeat protein (DUF295) [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565565.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q94C28, Q9ZUH0
    UniProtKB/TrEMBL
    A0A5S9X0Y8, A0A654EWT7, B9DHG3
    Conserved Domains (2) summary
    PLN03215
    Location:13 → 53
    PLN03215; ascorbic acid mannose pathway regulator 1; Provisional
    pfam03478
    Location:282 → 327
    DUF295; Protein of unknown function (DUF295)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZUH0.2

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