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VQ motif-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816819, updated on 18-Sep-2024

Summary

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Official Full Name
VQ motif-containing protein
Primary source
TAIR:AT2G22880
Locus tag
AT2G22880
See related
Araport:AT2G22880
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T20K9.9; T20K9_9
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Genomic context

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Location:
chromosome: 2
Exon count:
1
Sequence:
Chromosome: 2; NC_003071.7 (9741119..9741463, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene basic leucine-zipper 6 Neighboring gene ncRNA Neighboring gene phytosulfokine 2 precursor Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene Kua-ubiquitin conjugating enzyme hybrid localization domain-containing protein Neighboring gene Galactosyl transferase GMA12/MNN10 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis MAP kinase phosphatase 1 and its target MAP kinases 3 and 6 antagonistically determine UV-B stress tolerance, independent of the UVR8 photoreceptor pathway. González Besteiro MA, et al. Plant J, 2011 Nov. PMID 21790814
  2. Arabidopsis VQ motif-containing proteins VQ12 and VQ29 negatively modulate basal defense against Botrytis cinerea. Wang H, et al. Sci Rep, 2015 Sep 23. PMID 26394921, Free PMC Article
  3. A split-ubiquitin yeast two-hybrid screen to examine the substrate specificity of atToc159 and atToc132, two Arabidopsis chloroplast preprotein import receptors. Dutta S, et al. PLoS One, 2014. PMID 24736607, Free PMC Article
  4. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  5. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Study shows that VQ12 and VQ29 negatively regulate Arabidopsis basal resistance against B. cinerea. [VQ12]
    Title: Arabidopsis VQ motif-containing proteins VQ12 and VQ29 negatively modulate basal defense against Botrytis cinerea.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_127853.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within response to UV-B IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
VQ motif-containing protein
NP_179873.1
  • VQ motif-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, LP.08 eight leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT4G37710.1); Has 33 Blast hits to 33 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9741119..9741463 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127853.1 → NP_179873.1  VQ motif-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179873.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VL61, A0A7G2EAB3, O81005
    Conserved Domains (1) summary
    pfam05678
    Location:36 → 59
    VQ; VQ motif
Nucleotide Protein
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