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Translocon-associated protein (TRAP), alpha subunit [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816651, updated on 18-Sep-2024

Summary

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Official Full Name
Translocon-associated protein (TRAP), alpha subunit
Primary source
TAIR:AT2G21160
Locus tag
AT2G21160
See related
Araport:AT2G21160
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F26H11.8; F26H11_8
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Genomic context

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Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (9068252..9070473)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene proline-rich protein 2 Neighboring gene XAP5 family protein Neighboring gene triosephosphate isomerase Neighboring gene miscRNA Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Isolation of intact vacuoles and proteomic analysis of tonoplast from suspension-cultured cells of Arabidopsis thaliana. Shimaoka T, et al. Plant Cell Physiol, 2004 Jun. PMID 15215502
  2. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  3. New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy. Peltier JB, et al. J Biol Chem, 2004 Nov 19. PMID 15322131
  4. Mapping the Arabidopsis organelle proteome. Dunkley TP, et al. Proc Natl Acad Sci U S A, 2006 Apr 25. PMID 16618929, Free PMC Article
  5. The vegetative vacuole proteome of Arabidopsis thaliana reveals predicted and unexpected proteins. Carter C, et al. Plant Cell, 2004 Dec. PMID 15539469, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001084461.1
NM_127686.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus HDA PubMed 
located_in chloroplast thylakoid membrane HDA PubMed 
located_in endoplasmic reticulum HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 
located_in plant-type vacuole HDA PubMed 
located_in plasma membrane HDA PubMed 
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
Translocon-associated protein (TRAP), alpha subunit
NP_001077930.1
  • Translocon-associated protein (TRAP), alpha subunit; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP), alpha subunit (TAIR:AT2G16595.1); Has 230 Blast hits to 230 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 12; Plants - 58; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
NP_565498.1
  • Translocon-associated protein (TRAP), alpha subunit; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated protein (TRAP), alpha subunit (InterPro:IPR005595); BEST Arabidopsis thaliana protein match is: Translocon-associated protein (TRAP), alpha subunit (TAIR:AT2G16595.1); Has 246 Blast hits to 246 proteins in 95 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 24; Plants - 60; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    9068252..9070473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127686.4 → NP_565498.1  Translocon-associated protein (TRAP), alpha subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565498.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    P45434, Q94A59, Q9SKP7
    UniProtKB/TrEMBL
    A0A178VTE4, Q5M727, Q8LC49
    Conserved Domains (1) summary
    pfam03896
    Location:26 → 192
    TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit

  2. NM_001084461.1 → NP_001077930.1  Translocon-associated protein (TRAP), alpha subunit [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077930.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IGI4
    Conserved Domains (1) summary
    pfam03896
    Location:26 → 181
    TRAP_alpha; Translocon-associated protein (TRAP), alpha subunit
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P45434.3

Gene LinkOut

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