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Tesmin/TSO1-like CXC domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816530, updated on 18-Sep-2024

Summary

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Official Full Name
Tesmin/TSO1-like CXC domain-containing protein
Primary source
TAIR:AT2G20110
Locus tag
AT2G20110
See related
Araport:AT2G20110
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T2G17.9; T2G17_9
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (8683979..8687283)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene CONTINUOUS VASCULAR RING protein (DUF502) Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Popescu SC, et al. Proc Natl Acad Sci U S A, 2007 Mar 13. PMID 17360592, Free PMC Article
  2. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  3. Extensive signal integration by the phytohormone protein network. Altmann M, et al. Nature, 2020 Jul. PMID 32612234
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335661.1
NM_127569.3
NM_179664.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Tesmin/TSO1-like CXC domain-containing protein
NP_179601.1
  • Tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 1013 Blast hits to 701 proteins in 101 species: Archae - 0; Bacteria - 4; Metazoa - 299; Fungi - 6; Plants - 316; Viruses - 1; Other Eukaryotes - 387 (source: NCBI BLink).
NP_849995.1
  • Tesmin/TSO1-like CXC domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tesmin/TSO1-like, CXC (InterPro:IPR005172); BEST Arabidopsis thaliana protein match is: Tesmin/TSO1-like CXC domain-containing protein (TAIR:AT4G29000.1); Has 1016 Blast hits to 700 proteins in 97 species: Archae - 0; Bacteria - 2; Metazoa - 306; Fungi - 3; Plants - 316; Viruses - 1; Other Eukaryotes - 388 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8683979..8687283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127569.3 → NP_179601.1  Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179601.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IUE5, Q8GUZ0, Q8GUZ1, Q8GUZ2, Q9SL70
    UniProtKB/TrEMBL
    A0A178VQM8, A0A5S9WZW6, A0A654EUC9
    Conserved Domains (1) summary
    pfam03638
    Location:204 → 238
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  2. NM_179664.2 → NP_849995.1  Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849995.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQM8, A0A5S9WZW6
    Conserved Domains (1) summary
    pfam03638
    Location:203 → 238
    TCR; Tesmin/TSO1-like CXC domain, cysteine-rich domain

  3. NM_001335661.1 → NP_001325172.1  Tesmin/TSO1-like CXC domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VQM8, A0A1P8B2C5, A0A5S9WZW6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SL70.1

Gene LinkOut

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