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CHR8 chromatin remodeling 8 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816391, updated on 18-Sep-2024

Summary

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Official Symbol
CHR8
Official Full Name
chromatin remodeling 8
Primary source
TAIR:AT2G18760
Locus tag
AT2G18760
See related
Araport:AT2G18760
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
chromatin remodeling 8; ERCC6; MSF3.14; MSF3_14; RAD26
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Genomic context

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See CHR8 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Sequence:
Chromosome: 2; NC_003071.7 (8128706..8134401)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene Calmodulin-binding protein Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene F-box and associated interaction domains-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Involvement of the Arabidopsis SWI2/SNF2 chromatin remodeling gene family in DNA damage response and recombination. Shaked H, et al. Genetics, 2006 Jun. PMID 16547115, Free PMC Article
  2. Dynamic response of plant genome to ultraviolet radiation and other genotoxic stresses. Molinier J, et al. Mutat Res, 2005 Apr 1. PMID 15748650
  3. The chromatin remodeler ERCC6 and the histone chaperone NAP1 are involved in apurinic/apyrimidinic endonuclease-mediated DNA repair. Fan T, et al. Plant Cell, 2024 May 29. PMID 38367203, Free PMC Article
  4. Advanced proteomic analyses yield a deep catalog of ubiquitylation targets in Arabidopsis. Kim DY, et al. Plant Cell, 2013 May. PMID 23667124, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The chromatin remodeler ERCC6 and the histone chaperone NAP1 are involved in apurinic/apyrimidinic endonuclease-mediated DNA repair.
    Title: The chromatin remodeler ERCC6 and the histone chaperone NAP1 are involved in apurinic/apyrimidinic endonuclease-mediated DNA repair.
Submit: New GeneRIF Correction

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335605.1
NM_001335609.1
NM_001335610.1
NM_127432.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
acts_upstream_of_or_within DNA repair IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within response to gamma radiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
chromatin remodeling 8
NP_001318246.1
  • chromatin remodeling 8 (CHR8); FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; INVOLVED IN: DNA repair, response to gamma radiation; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 24 (TAIR:AT5G63950.1); Has 17230 Blast hits to 14463 proteins in 1653 species: Archae - 99; Bacteria - 4180; Metazoa - 3846; Fungi - 4219; Plants - 1677; Viruses - 118; Other Eukaryotes - 3091 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    8128706..8134401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335607.1 → NP_001324142.1  chromatin remodeling 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZA4, A0A654EVB3

  2. NM_001335606.1 → NP_001324143.1  chromatin remodeling 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZV43
    UniProtKB/TrEMBL
    A0A178VUI7, A0A654EVB3
    Conserved Domains (2) summary
    COG0553
    Location:377 → 893
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18000
    Location:385 → 593
    DEXHc_ERCC6; DEXH-box helicase domain of ERCC6

  3. NM_001335608.1 → NP_001324146.1  chromatin remodeling 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZV43
    UniProtKB/TrEMBL
    A0A178VUI7, A0A654EVB3
    Conserved Domains (2) summary
    COG0553
    Location:377 → 893
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18000
    Location:385 → 593
    DEXHc_ERCC6; DEXH-box helicase domain of ERCC6

  4. NM_001335605.1 → NP_001318246.1  chromatin remodeling 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZV43
    UniProtKB/TrEMBL
    A0A178VUI7, A0A654EVB3
    Conserved Domains (2) summary
    COG0553
    Location:377 → 893
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18000
    Location:385 → 593
    DEXHc_ERCC6; DEXH-box helicase domain of ERCC6

  5. NM_001335609.1 → NP_001324145.1  chromatin remodeling 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZV43
    UniProtKB/TrEMBL
    A0A178VUI7, A0A654EVB3
    Conserved Domains (2) summary
    COG0553
    Location:377 → 893
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18000
    Location:385 → 593
    DEXHc_ERCC6; DEXH-box helicase domain of ERCC6

  6. NM_001335610.1 → NP_001324144.1  chromatin remodeling 8 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZV43
    UniProtKB/TrEMBL
    A0A178VUI7, A0A654EVB3
    Conserved Domains (2) summary
    COG0553
    Location:377 → 893
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18000
    Location:385 → 593
    DEXHc_ERCC6; DEXH-box helicase domain of ERCC6

  7. NM_127432.2 → NP_179466.1  chromatin remodeling 8 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179466.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZV43
    UniProtKB/TrEMBL
    A0A178VUI7, A0A654EVB3
    Conserved Domains (2) summary
    COG0553
    Location:377 → 893
    HepA; Superfamily II DNA or RNA helicase, SNF2 family [Transcription, Replication, recombination and repair]
    cd18000
    Location:385 → 593
    DEXHc_ERCC6; DEXH-box helicase domain of ERCC6
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZV43.1

Gene LinkOut

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