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late embryogenesis abundant domain-containing protein / LEA domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816349, updated on 18-Sep-2024

Summary

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Official Full Name
late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Primary source
TAIR:AT2G18340
Locus tag
AT2G18340
See related
Araport:AT2G18340
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T30D6.15; T30D6_15
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (7969298..7971114)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene AAA-type ATPase family protein Neighboring gene RAD-like 4 Neighboring gene homeobox protein 24 Neighboring gene alpha/beta-Hydrolases superfamily protein Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LEA13 and LEA30 Are Involved in Tolerance to Water Stress and Stomata Density in Arabidopsis thaliana. López-Cordova A, et al. Plants (Basel), 2021 Aug 18. PMID 34451739, Free PMC Article
  2. The ubiquitous distribution of late embryogenesis abundant proteins across cell compartments in Arabidopsis offers tailored protection against abiotic stress. Candat A, et al. Plant Cell, 2014 Jul. PMID 25005920, Free PMC Article
  3. A mesoscale abscisic acid hormone interactome reveals a dynamic signaling landscape in Arabidopsis. Lumba S, et al. Dev Cell, 2014 May 12. PMID 24823379
  4. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001202620.1
NM_001335592.1
NM_127391.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in response to water deprivation IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum HDA PubMed 
located_in extracellular region ISM
Inferred from Sequence Model
more info
  
located_in vacuole HDA PubMed 

General protein information

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Preferred Names
late embryogenesis abundant domain-containing protein / LEA domain-containing protein
NP_001189549.1
  • late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; EXPRESSED IN: petal, leaf whorl, sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein (TAIR:AT4G36600.1).
NP_179425.1
  • late embryogenesis abundant domain-containing protein / LEA domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sperm cell, male gametophyte, flower; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 4 (InterPro:IPR004238); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) protein (TAIR:AT4G36600.1); Has 8432 Blast hits to 2711 proteins in 785 species: Archae - 21; Bacteria - 3659; Metazoa - 711; Fungi - 355; Plants - 2545; Viruses - 35; Other Eukaryotes - 1106 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7969298..7971114
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127391.3 → NP_179425.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179425.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9ZPW6
    Conserved Domains (1) summary
    pfam02987
    Location:132 → 175
    LEA_4; Late embryogenesis abundant protein

  2. NM_001335592.1 → NP_001323621.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AXM0

  3. NM_001202620.1 → NP_001189549.1  late embryogenesis abundant domain-containing protein / LEA domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189549.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IQI5
    Conserved Domains (1) summary
    pfam02987
    Location:93 → 136
    LEA_4; Late embryogenesis abundant protein
Nucleotide Protein
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