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PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816321, updated on 18-Sep-2024

Summary

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Official Full Name
PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein
Primary source
TAIR:AT2G18090
Locus tag
AT2G18090
See related
Araport:AT2G18090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T27K22.4; T27K22_4
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (7864175..7867820)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene Serine carboxypeptidase S28 family protein Neighboring gene ncRNA Neighboring gene transmembrane/coiled-coil protein (DUF726) Neighboring gene Translation elongation factor EF1B/ribosomal protein S6 family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis scaffold protein RACK1A interacts with diverse environmental stress and photosynthesis related proteins. Kundu N, et al. Plant Signal Behav, 2013 May. PMID 23435172, Free PMC Article
  2. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_179640.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein
NP_849971.1
  • PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), SWIB/MDM2 domain (InterPro:IPR003121), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), GYF (InterPro:IPR003169), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: DNA binding;zinc ion binding;nucleic acid binding;nucleic acid binding (TAIR:AT3G51120.1); Has 1270 Blast hits to 1121 proteins in 190 species: Archae - 0; Bacteria - 166; Metazoa - 513; Fungi - 60; Plants - 433; Viruses - 0; Other Eukaryotes - 98 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7864175..7867820
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335581.1 → NP_001325275.1  PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B2P9, A0A7G2E743

  2. NM_179640.2 → NP_849971.1  PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849971.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WYY1, A0A654ETU5, Q94JX1
    Conserved Domains (3) summary
    smart00444
    Location:457 → 512
    GYF; Contains conserved Gly-Tyr-Phe residues
    cd15568
    Location:81 → 126
    PHD5_NSD; PHD finger 5 found in nuclear receptor-binding SET domain-containing (NSD) proteins
    pfam02201
    Location:299 → 370
    SWIB; SWIB/MDM2 domain
Nucleotide Protein
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