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TAF14 TBP-associated factor 14 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816312, updated on 18-Sep-2024

Summary

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Official Symbol
TAF14
Official Full Name
TBP-associated factor 14
Primary source
TAIR:AT2G18000
Locus tag
AT2G18000
See related
Araport:AT2G18000
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
homolog of yeast YAF9 b; T27K22.13; T27K22_13; TBP-associated factor 14; YAF9b
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Genomic context

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See TAF14 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (7828976..7830898)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Sec1/munc18-like (SM) proteins superfamily Neighboring gene polyamine-modulated factor 1-binding protein Neighboring gene ncRNA Neighboring gene SAUR-like auxin-responsive protein family

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis ortholog of the YEATS domain containing protein YAF9a regulates flowering by controlling H4 acetylation levels at the FLC locus. Zacharaki V, et al. Plant Sci, 2012 Nov. PMID 23017898
  2. The FRIGIDA complex activates transcription of FLC, a strong flowering repressor in Arabidopsis, by recruiting chromatin modification factors. Choi K, et al. Plant Cell, 2011 Jan. PMID 21282526, Free PMC Article
  3. Yeast two-hybrid map of Arabidopsis TFIID. Lawit SJ, et al. Plant Mol Biol, 2007 May. PMID 17340043
  4. AtEAF1 is a potential platform protein for Arabidopsis NuA4 acetyltransferase complex. Bieluszewski T, et al. BMC Plant Biol, 2015 Mar 5. PMID 25849764, Free PMC Article
  5. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data indicate that two ortholog of the YEATS domain containing protein At5g45600 and At2g18000 were identified, which were designated as YAF9a and YAF9b/TAF14.
    Title: The Arabidopsis ortholog of the YEATS domain containing protein YAF9a regulates flowering by controlling H4 acetylation levels at the FLC locus.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Gene Ontology Provided by TAIR

Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within regulation of photoperiodism, flowering IGI
Inferred from Genetic Interaction
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TBP-associated factor 14
NP_001189547.1
  • TBP-associated factor 14 (TAF14); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: YEATS family protein (TAIR:AT5G45600.2).
NP_179391.1
  • TBP-associated factor 14 (TAF14); INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: YEATS (InterPro:IPR005033); BEST Arabidopsis thaliana protein match is: YEATS family protein (TAIR:AT5G45600.1); Has 784 Blast hits to 784 proteins in 216 species: Archae - 0; Bacteria - 2; Metazoa - 356; Fungi - 265; Plants - 64; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7828976..7830898
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001202618.2 → NP_001189547.1  TBP-associated factor 14 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189547.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IPK2, Q9SL46
    UniProtKB/TrEMBL
    A0A5S9WYX1, A0A654EVD4
    Conserved Domains (1) summary
    cd16910
    Location:40 → 173
    YEATS_TFIID14_like; YEATS domain found in transcription initiation factor TFIID subunit 14 and similar proteins

  2. NM_127356.1 → NP_179391.1  TBP-associated factor 14 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179391.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    F4IPK2
    Conserved Domains (1) summary
    pfam03366
    Location:62 → 142
    YEATS; YEATS family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
F4IPK2.1

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