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ARID/BRIGHT DNA-binding domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816247, updated on 18-Sep-2024

Summary

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Official Full Name
ARID/BRIGHT DNA-binding domain-containing protein
Primary source
TAIR:AT2G17410
Locus tag
AT2G17410
See related
Araport:AT2G17410
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AT2G17400; F5J6.17; F5J6_17
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Genomic context

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Location:
chromosome: 2
Exon count:
14
Sequence:
Chromosome: 2; NC_003071.7 (7558916..7563781)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene associated protein 19 Neighboring gene ankyrin repeat-containing 2B Neighboring gene NADPH-dependent thioredoxin reductase A Neighboring gene Seven transmembrane MLO family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis. Miller MJ, et al. Proc Natl Acad Sci U S A, 2010 Sep 21. PMID 20813957, Free PMC Article
  2. The PEAT protein complexes are required for histone deacetylation and heterochromatin silencing. Tan LM, et al. EMBO J, 2018 Oct 1. PMID 30104406, Free PMC Article
  3. Proteome-wide screens for small ubiquitin-like modifier (SUMO) substrates identify Arabidopsis proteins implicated in diverse biological processes. Elrouby N, et al. Proc Natl Acad Sci U S A, 2010 Oct 5. PMID 20855607, Free PMC Article
  4. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
  5. CrY2H-seq: a massively multiplexed assay for deep-coverage interactome mapping. Wanamaker SA, et al. Nat Methods, 2017 Aug. PMID 28650476, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001202611.1
NM_001335547.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  
part_of protein-containing complex IPI
Inferred from Physical Interaction
more info
 PubMed 

General protein information

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Preferred Names
ARID/BRIGHT DNA-binding domain-containing protein
NP_001189540.1
  • ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2).
NP_179333.2
  • ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock protein Hsp20 (InterPro:IPR002068), HSP20-like chaperone (InterPro:IPR008978), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT1G76510.2); Has 5354 Blast hits to 4027 proteins in 528 species: Archae - 33; Bacteria - 832; Metazoa - 1934; Fungi - 748; Plants - 402; Viruses - 44; Other Eukaryotes - 1361 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7558916..7563781
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127296.3 → NP_179333.2  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179333.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67YT6, Q940Y3
    UniProtKB/TrEMBL
    A0A654ETM9
    Conserved Domains (2) summary
    cd00298
    Location:705 → 781
    ACD_sHsps_p23-like; This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, ...
    smart00501
    Location:495 → 583
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain

  2. NM_001202611.1 → NP_001189540.1  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189540.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ETM9, F4INH0
    Conserved Domains (2) summary
    cd00298
    Location:699 → 775
    ACD_sHsps_p23-like; This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins. sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, ...
    smart00501
    Location:495 → 583
    BRIGHT; BRIGHT, ARID (A/T-rich interaction domain) domain

  3. NM_001335547.1 → NP_001325412.1  ARID/BRIGHT DNA-binding domain-containing protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67YT6, Q940Y3
    UniProtKB/TrEMBL
    A0A654ETM9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q940Y3.1

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