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Ribosomal protein S4 (RPS4A) family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816243, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein S4 (RPS4A) family protein
Primary source
TAIR:AT2G17360
Locus tag
AT2G17360
See related
Araport:AT2G17360
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F5J6.12; F5J6_12
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Sequence:
Chromosome: 2; NC_003071.7 (7546440..7548406)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene pantothenate kinase Neighboring gene beta-mannosyltransferase-like protein Neighboring gene 3-hydroxy-3-methylglutaryl-CoA reductase 2 Neighboring gene associated protein 19

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and dynamics of Arabidopsis adaptor protein-2 complex and its involvement in floral organ development. Yamaoka S, et al. Plant Cell, 2013 Aug. PMID 23975897, Free PMC Article
  2. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  3. Proteomic analysis of the 26S proteasome reveals its direct interaction with transit peptides of plastid protein precursors for their degradation. Sako K, et al. J Proteome Res, 2014 Jul 3. PMID 24846764
  4. Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification. Carroll AJ, et al. Mol Cell Proteomics, 2008 Feb. PMID 17934214
  5. A proteomics dissection of Arabidopsis thaliana vacuoles isolated from cell culture. Jaquinod M, et al. Mol Cell Proteomics, 2007 Mar. PMID 17151019, Free PMC Article

See all (11) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001202610.1
NM_127291.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables mRNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
NOT located_in Golgi apparatus RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  
part_of cytosolic small ribosomal subunit HDA PubMed 
located_in mitochondrion HDA PubMed 
located_in plant-type vacuole HDA PubMed 

General protein information

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Preferred Names
Ribosomal protein S4 (RPS4A) family protein
NP_001189539.1
  • Ribosomal protein S4 (RPS4A) family protein; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1).
NP_565414.1
  • Ribosomal protein S4 (RPS4A) family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S4e, central (InterPro:IPR013845), Ribosomal protein S4e, N-terminal, conserved site (InterPro:IPR018199), KOW (InterPro:IPR005824), RNA-binding S4 (InterPro:IPR002942), Ribosomal protein S4e, N-terminal (InterPro:IPR013843), Ribosomal protein S4e (InterPro:IPR000876); BEST Arabidopsis thaliana protein match is: Ribosomal protein S4 (RPS4A) family protein (TAIR:AT5G07090.1); Has 1386 Blast hits to 1386 proteins in 444 species: Archae - 258; Bacteria - 2; Metazoa - 428; Fungi - 183; Plants - 271; Viruses - 0; Other Eukaryotes - 244 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7546440..7548406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127291.4 → NP_565414.1  Ribosomal protein S4 (RPS4A) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565414.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q7XJS7, Q93VH9
    UniProtKB/TrEMBL
    A0A5S9WYP6, A0A654FZG2
    Conserved Domains (1) summary
    PLN00036
    Location:1 → 261
    PLN00036; 40S ribosomal protein S4; Provisional

  2. NM_001202610.1 → NP_001189539.1  Ribosomal protein S4 (RPS4A) family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001189539.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IMI7
    Conserved Domains (4) summary
    PLN00036
    Location:1 → 181
    PLN00036; 40S ribosomal protein S4; Provisional
    cd00165
    Location:51 → 112
    S4; S4/Hsp/ tRNA synthetase RNA-binding domain; The domain surface is populated by conserved, charged residues that define a likely RNA-binding site; Found in stress proteins, ribosomal proteins and tRNA synthetases; This may imply a hitherto unrecognized ...
    pfam00900
    Location:95 → 169
    Ribosomal_S4e; Ribosomal family S4e
    pfam08071
    Location:3 → 39
    RS4NT; RS4NT (NUC023) domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q93VH9.1

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