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Ribosomal protein L27 family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 816196, updated on 18-Sep-2024

Summary

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Official Full Name
Ribosomal protein L27 family protein
Primary source
TAIR:AT2G16930
Locus tag
AT2G16930
See related
Araport:AT2G16930
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F12A24.11; F12A24_11
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (7341078..7342317)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene basic helix-loop-helix (bHLH) DNA-binding superfamily protein Neighboring gene ubiquitin-conjugating enzyme 23 Neighboring gene Splicing factor, CC1-like protein Neighboring gene transportin 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001084435.1
NM_001335503.1
NM_127246.4
NM_179630.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrion ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Ribosomal protein L27 family protein
NP_001077904.1
  • Ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: Ribosomal protein L27 family protein (TAIR:AT5G15220.1); Has 7688 Blast hits to 7688 proteins in 2721 species: Archae - 0; Bacteria - 5395; Metazoa - 115; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 1920 (source: NCBI BLink).
NP_565398.1
  • Ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: Ribosomal protein L27 family protein (TAIR:AT5G15220.1); Has 7688 Blast hits to 7688 proteins in 2721 species: Archae - 0; Bacteria - 5395; Metazoa - 115; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 1920 (source: NCBI BLink).
NP_849961.1
  • Ribosomal protein L27 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; CONTAINS InterPro DOMAIN/s: Ribosomal protein L27 (InterPro:IPR001684), Ribosomal protein L27, conserved site (InterPro:IPR018261); BEST Arabidopsis thaliana protein match is: Ribosomal protein L27 family protein (TAIR:AT5G15220.1); Has 7688 Blast hits to 7688 proteins in 2721 species: Archae - 0; Bacteria - 5395; Metazoa - 115; Fungi - 142; Plants - 116; Viruses - 0; Other Eukaryotes - 1920 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    7341078..7342317
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_127246.4 → NP_565398.1  Ribosomal protein L27 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_565398.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRS3, A0A384KWX6, Q9LXF9, Q9ZVX0
    Conserved Domains (1) summary
    PRK05435
    Location:47 → 127
    rpmA; 50S ribosomal protein L27; Validated

  2. NM_179630.3 → NP_849961.1  Ribosomal protein L27 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_849961.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRS3, A0A384KWX6, Q9LXF9, Q9ZVX0
    Conserved Domains (1) summary
    PRK05435
    Location:47 → 127
    rpmA; 50S ribosomal protein L27; Validated

  3. NM_001335503.1 → NP_001325380.1  Ribosomal protein L27 family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRS3, A0A384KWX6, Q9LXF9, Q9ZVX0
    Conserved Domains (1) summary
    PRK05435
    Location:47 → 127
    rpmA; 50S ribosomal protein L27; Validated

  4. NM_001084435.1 → NP_001077904.1  Ribosomal protein L27 family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001077904.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178VRS3, A0A384KWX6, Q9LXF9, Q9ZVX0
    Conserved Domains (1) summary
    PRK05435
    Location:47 → 127
    rpmA; 50S ribosomal protein L27; Validated
Nucleotide Protein
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