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SERK5 somatic embryogenesis receptor-like kinase 5 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815863, updated on 15-Feb-2024

Summary

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Gene symbol
SERK5
Gene description
somatic embryogenesis receptor-like kinase 5
Primary source
Araport:AT2G13800
Locus tag
AT2G13800
See related
TAIR:AT2G13800
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
ATSERK5; BAK8; BRI1- ASSOCIATED KINASE 8; F13J11.15; F13J11_15; SOMATIC EMBRYOGENESIS RECEPTOR LIKE KINASE 5; somatic embryogenesis receptor-like kinase 5
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Genomic context

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See SERK5 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Sequence:
Chromosome: 2; NC_003071.7 (5753103..5757353)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene nuclease Neighboring gene somatic embryogenesis receptor-like kinase 4 Neighboring gene AGD2-like defense response protein 1 Neighboring gene Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 gene is expressed in developing ovules and embryos and enhances embryogenic competence in culture. Hecht V, et al. Plant Physiol, 2001 Nov. PMID 11706164, Free PMC Article
  2. An extracellular network of Arabidopsis leucine-rich repeat receptor kinases. Smakowska-Luzan E, et al. Nature, 2018 Jan 18. PMID 29320478, Free PMC Article
  3. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  4. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  5. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001335399.1
NM_001335401.1

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables identical protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables transmembrane receptor protein serine/threonine kinase activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within protein phosphorylation ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in mitochondrion HDA PubMed 

General protein information

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Preferred Names
somatic embryogenesis receptor-like kinase 5
NP_001318220.1
  • somatic embryogenesis receptor-like kinase 5 (SERK5); FUNCTIONS IN: protein kinase activity, transmembrane receptor protein serine/threonine kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: somatic embryogenesis receptor-like kinase 4 (TAIR:AT2G13790.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    5753103..5757353
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335400.1 → NP_001324219.1  somatic embryogenesis receptor-like kinase 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZF0

  2. NM_126956.4 → NP_179000.3  somatic embryogenesis receptor-like kinase 5 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_179000.3

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGK2, Q8LPS5, Q9SKG4
    UniProtKB/TrEMBL
    A0A178VYV7
    Conserved Domains (5) summary
    smart00221
    Location:280 → 549
    STYKc; Protein kinase; unclassified specificity
    sd00033
    Location:72 → 95
    LRR_RI; leucine-rich repeat [structural motif]
    pfam08263
    Location:26 → 67
    LRRNT_2; Leucine rich repeat N-terminal domain
    pfam13855
    Location:71 → 130
    LRR_8; Leucine rich repeat
    cl21453
    Location:281 → 552
    PKc_like; Protein Kinases, catalytic domain

  3. NM_001335399.1 → NP_001318220.1  somatic embryogenesis receptor-like kinase 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    C0LGK2, Q8LPS5, Q9SKG4
    UniProtKB/TrEMBL
    A0A178VYV7

  4. NM_001335401.1 → NP_001324220.1  somatic embryogenesis receptor-like kinase 5 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AZF0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8LPS5.2

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