AT2G05120 Nucleoporin, Nup133/Nup155-like protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Gene symbol: AT2G05120
Gene description: Nucleoporin, Nup133/Nup155-like protein
Primary source: Araport:AT2G05120
Locus tag: AT2G05120
See related: TAIR:AT2G05120
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: F5G3.2; F5G3_2
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Genomic context

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See AT2G05120 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 8

Sequence:: Chromosome: 2; NC_003071.7 (1841876..1846949, complement)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_001202582.1

Supported by ESTs:

NM_001335271.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables structural constituent of nuclear pore	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: Nucleoporin, Nup133/Nup155-like protein

NP_001189511.1

Nucleoporin, Nup133/Nup155-like; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187).

NP_001318200.1

Nucleoporin, Nup133/Nup155-like; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Nucleoporin, Nup133/Nup155-like, N-terminal (InterPro:IPR014908), Nucleoporin, Nup133/Nup155-like, C-terminal (InterPro:IPR007187); Has 161 Blast hits to 161 proteins in 58 species: Archae - 0; Bacteria - 2; Metazoa - 99; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

1841876..1846949 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001335271.1 → NP_001318200.1 Nucleoporin, Nup133/Nup155-like protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A2H1ZE14
NM_001202582.1 → NP_001189511.1 Nucleoporin, Nup133/Nup155-like protein [Arabidopsis thaliana]

See identical proteins and their annotated locations for NP_001189511.1

Status: REVIEWED

UniProtKB/Swiss-Prot

F4IGA4, F4IGA5, Q9SJ43

Conserved Domains (2) summary

pfam03177
Location:920 → 1149

Nucleoporin_C; Non-repetitive/WGA-negative nucleoporin C-terminal

pfam08801
Location:75 → 495

Nucleoporin_N; Nup133 N terminal like