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SCL21 SCARECROW-like 21 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 815036, updated on 18-Sep-2024

Summary

Official Symbol
SCL21
Official Full Name
SCARECROW-like 21
Primary source
TAIR:AT2G04890
Locus tag
AT2G04890
See related
Araport:AT2G04890
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F1O13.2; F1O13_2; SCARECROW-like 21
Summary
Encodes a scarecrow-like protein (SCL21). Member of GRAS gene family.
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Genomic context

See SCL21 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Sequence:
Chromosome: 2; NC_003071.7 (1720361..1722604, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Aminotransferase-like, plant mobile domain family protein Neighboring gene uncharacterized protein Neighboring gene zinc-dependent activator protein-1 Neighboring gene uncharacterized protein Neighboring gene Carbohydrate-binding X8 domain superfamily protein Neighboring gene F-box and associated interaction domains-containing protein

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

NM_126521.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of DNA-templated transcription TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
 

General protein information

Preferred Names
SCARECROW-like 21
NP_178566.1
  • SCARECROW-like 21 (SCL21); CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT5G48150.2); Has 2478 Blast hits to 2441 proteins in 302 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 2474; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1720361..1722604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126521.3NP_178566.1  SCARECROW-like 21 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178566.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q67ZL8, Q67ZX7, Q9S7H5
    UniProtKB/TrEMBL
    A0A178VWV4, A0A5S9WX85, A0A654ETB9
    Conserved Domains (1) summary
    pfam03514
    Location:50413
    GRAS; GRAS domain family