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TRAF-like family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814954, updated on 18-Sep-2024

Summary

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Official Full Name
TRAF-like family protein
Primary source
TAIR:AT2G04170
Locus tag
AT2G04170
See related
Araport:AT2G04170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
T16B23.2; T16B23_2
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Genomic context

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Location:
chromosome: 2
Exon count:
9
Sequence:
Chromosome: 2; NC_003071.7 (1417178..1419621, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Subtilisin-like serine endopeptidase family protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interactomics of Qa-SNARE in Arabidopsis thaliana. Fujiwara M, et al. Plant Cell Physiol, 2014 Apr. PMID 24556609
  2. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197
  3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001036241.3
NM_001124791.1
NM_001124792.1
NM_001161021.2
NM_001335219.1
NM_126454.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
TRAF-like family protein
NP_001031318.1
  • TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
NP_001118263.1
  • TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001118264.1
  • TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_001154493.1
  • TRAF-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 40157 Blast hits to 13977 proteins in 907 species: Archae - 22; Bacteria - 17141; Metazoa - 12439; Fungi - 1936; Plants - 3869; Viruses - 495; Other Eukaryotes - 4255 (source: NCBI BLink).
NP_178502.2
  • TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT5G26280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1417178..1419621 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001335218.1 → NP_001324072.1  TRAF-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W052, A0A1P8AZ34

  2. NM_001036241.3 → NP_001031318.1  TRAF-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001031318.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W052, Q6RF45
    Conserved Domains (1) summary
    cd00121
    Location:133 → 261
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

  3. NM_001124792.1 → NP_001118264.1  TRAF-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118264.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IV56
    Conserved Domains (1) summary
    cd00121
    Location:11 → 139
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

  4. NM_126454.4 → NP_178502.2  TRAF-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178502.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W052, Q6RF45
    Conserved Domains (1) summary
    cd00121
    Location:133 → 261
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

  5. NM_001124791.1 → NP_001118263.1  TRAF-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118263.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F4IV56
    Conserved Domains (1) summary
    cd00121
    Location:11 → 139
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

  6. NM_001335219.1 → NP_001324073.1  TRAF-like family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AYX3

  7. NM_001161021.2 → NP_001154493.1  TRAF-like family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001154493.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178W052, F4IV58
    Conserved Domains (1) summary
    cd00121
    Location:133 → 261
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
Nucleotide Protein
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