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MATE efflux family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814944, updated on 18-Sep-2024

Summary

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Official Full Name
MATE efflux family protein
Primary source
TAIR:AT2G04080
Locus tag
AT2G04080
See related
Araport:AT2G04080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F3L12.9; F3L12_9
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Genomic context

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Location:
chromosome: 2
Exon count:
6
Sequence:
Chromosome: 2; NC_003071.7 (1357156..1359403, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene MATE efflux family protein Neighboring gene MATE efflux family protein Neighboring gene MATE efflux family protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A membrane protein/signaling protein interaction network for Arabidopsis version AMPv2. Lalonde S, et al. Front Physiol, 2010. PMID 21423366, Free PMC Article
  2. Border control--a membrane-linked interactome of Arabidopsis. Jones AM, et al. Science, 2014 May 16. PMID 24833385
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335215.1
NM_126449.5

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables antiporter activity IEA
Inferred from Electronic Annotation
more info
  
enables xenobiotic transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in xenobiotic detoxification by transmembrane export across the plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MATE efflux family protein
NP_178497.2
  • MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT2G04070.1); Has 9518 Blast hits to 9397 proteins in 1914 species: Archae - 186; Bacteria - 6503; Metazoa - 146; Fungi - 326; Plants - 1327; Viruses - 0; Other Eukaryotes - 1030 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1357156..1359403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126449.5 → NP_178497.2  MATE efflux family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178497.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GXM8, Q9SIA2
    UniProtKB/TrEMBL
    A0A5S9WX32, A0A7G2EBA0
    Conserved Domains (2) summary
    COG0534
    Location:26 → 467
    NorM; Na+-driven multidrug efflux pump [Defense mechanisms]
    cd13132
    Location:27 → 463
    MATE_eukaryotic; Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

  2. NM_001335215.1 → NP_001324727.1  MATE efflux family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8B0Y4, A0A5S9WX32, A0A7G2EBA0
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GXM8.1

Gene LinkOut

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