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Translin family protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814905, updated on 18-Sep-2024

Summary

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Official Full Name
Translin family protein
Primary source
TAIR:AT2G03780
Locus tag
AT2G03780
See related
Araport:AT2G03780
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
F19B11.23; F19B11_23
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Sequence:
Chromosome: 2; NC_003071.7 (1152446..1154322, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene sulfotransferase 12 Neighboring gene P-loop containing nucleoside triphosphate hydrolases superfamily protein Neighboring gene tRNA-Val Neighboring gene D-aminoacyl-tRNA deacylase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis. Klopffleisch K, et al. Mol Syst Biol, 2011 Sep 27. PMID 21952135, Free PMC Article
  2. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
  3. Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana. Lin X, et al. Nature, 1999 Dec 16. PMID 10617197

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_001335201.1
NM_001335202.1
NM_126425.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chloroplast ISM
Inferred from Sequence Model
more info
  
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Translin family protein
NP_178473.2
  • Translin family protein; FUNCTIONS IN: sequence-specific DNA binding, DNA binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Translin, C-terminal (InterPro:IPR016069), Translin (InterPro:IPR002848), Translin, N-terminal (InterPro:IPR016068); Has 561 Blast hits to 561 proteins in 195 species: Archae - 92; Bacteria - 2; Metazoa - 209; Fungi - 153; Plants - 36; Viruses - 0; Other Eukaryotes - 69 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    1152446..1154322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126425.4 → NP_178473.2  Translin family protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178473.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A5S9WWZ4, A0A654ET18, Q8GZ75
    Conserved Domains (1) summary
    pfam01997
    Location:66 → 264
    Translin; Translin family

  2. NM_001335201.1 → NP_001323482.1  Translin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AX63

  3. NM_001335202.1 → NP_001323481.1  Translin family protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8AX91, A0A5S9WWZ4
Nucleotide Protein
Heading Accession and Version

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