AGL30 AGAMOUS-like 30 [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: AGL30
Official Full Name: AGAMOUS-like 30
Primary source: TAIR:AT2G03060
Locus tag: AT2G03060
See related: Araport:AT2G03060
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: AGAMOUS-like 30; T17M13.23; T17M13_23
Summary: Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing)family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.
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Genomic context

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See AGL30 in Genome Data Viewer

Location:: chromosome: 2

Exon count:: 12

Sequence:: Chromosome: 2; NC_003071.7 (901061..904149)

Chromosome 2 - NC_003071.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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NM_001335151.1

Supported by ESTs:

NM_001335152.1

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within pollen development	IGI Inferred from Genetic Interaction more info	PubMed
involved_in pollen maturation	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info
involved_in regulation of pollen tube growth	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: AGAMOUS-like 30

NP_001318186.1

AGAMOUS-like 30 (AGL30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 94 (TAIR:AT1G69540.1); Has 5791 Blast hits to 5791 proteins in 704 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 306; Plants - 4796; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).

NP_001318187.1

AGAMOUS-like 30 (AGL30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 65 (TAIR:AT1G18750.1); Has 6155 Blast hits to 6155 proteins in 757 species: Archae - 0; Bacteria - 0; Metazoa - 616; Fungi - 313; Plants - 5146; Viruses - 0; Other Eukaryotes - 80 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003071.7 Reference assembly

Range

901061..904149

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001335153.1 → NP_001323519.1 AGAMOUS-like 30 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VTK2, A0A5S9WWQ8, F4IS82
NM_001335154.1 → NP_001323520.1 AGAMOUS-like 30 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AXD0
NM_001335157.1 → NP_001323523.1 AGAMOUS-like 30 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VTK2, A0A5S9WWQ8, F4IS82
NM_001335155.1 → NP_001323521.1 AGAMOUS-like 30 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AXD0
NM_001335156.1 → NP_001323522.1 AGAMOUS-like 30 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A1P8AXD0
NM_001335152.1 → NP_001318187.1 AGAMOUS-like 30 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

A0MEI3, O80619, Q1PFA4

UniProtKB/TrEMBL

A0A178VTK2, A0A5S9WWQ8
NM_001335151.1 → NP_001318186.1 AGAMOUS-like 30 [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178VTK2, A0A5S9WWQ8, F4IS82