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ETL1 SNF2 domain-containing protein / helicase domain-containing protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814740, updated on 18-Sep-2024

Summary

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Official Symbol
ETL1
Official Full Name
SNF2 domain-containing protein / helicase domain-containing protein
Primary source
TAIR:AT2G02090
Locus tag
AT2G02090
See related
Araport:AT2G02090
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
CHA19; CHR19; CHROMATIN REMODELING 19; F5O4.14; F5O4_14
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Genomic context

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See ETL1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Sequence:
Chromosome: 2; NC_003071.7 (523223..527068)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene indeterminate(ID)-domain 4 Neighboring gene ncRNA Neighboring gene low-molecular-weight cysteine-rich 69 Neighboring gene Ta11-like non-LTR retrotransposon

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular aspects of plant adaptation to life in the Chernobyl zone. Kovalchuk I, et al. Plant Physiol, 2004 May. PMID 15133154, Free PMC Article
  2. Genome stability of vtc1, tt4, and tt5 Arabidopsis thaliana mutants impaired in protection against oxidative stress. Filkowski J, et al. Plant J, 2004 Apr. PMID 15053760
  3. An armadillo-domain protein participates in a telomerase interaction network. Dokládal L, et al. Plant Mol Biol, 2018 Jul. PMID 29948659
  4. SUVR2 is involved in transcriptional gene silencing by associating with SNF2-related chromatin-remodeling proteins in Arabidopsis. Han YF, et al. Cell Res, 2014 Dec. PMID 25420628, Free PMC Article
  5. Tandem affinity purification of AtTERT reveals putative interaction partners of plant telomerase in vivo. Majerská J, et al. Protoplasma, 2017 Jul. PMID 27853871

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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NM_126270.2

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables ATP-dependent chromatin remodeler activity IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA damage response IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cellular response to UV-C IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
SNF2 domain-containing protein / helicase domain-containing protein
NP_178318.1
  • ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    523223..527068
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126270.2 → NP_178318.1  SNF2 domain-containing protein / helicase domain-containing protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178318.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9ZUL5
    UniProtKB/TrEMBL
    A0A178VWA6, A0A5S9WWJ1
    Conserved Domains (1) summary
    PLN03142
    Location:213 → 739
    PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9ZUL5.1

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