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IDD4 [ Arabidopsis thaliana (thale cress) ]

Gene ID: 814739, updated on 22-Aug-2024

Summary

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Official Symbol
IDD4
Primary source
Araport:AT2G02080
Locus tag
AT2G02080
See related
TAIR:AT2G02080
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtIDD4; F5O4.15; F5O4_15; indeterminate(ID)-domain 4
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Genomic context

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Location:
chromosome: 2
Exon count:
4
Sequence:
Chromosome: 2; NC_003071.7 (518079..521737, complement)

Chromosome 2 - NC_003071.7Genomic Context describing neighboring genes Neighboring gene Nucleotide-diphospho-sugar transferase family protein Neighboring gene indeterminate(ID)-domain 5 Neighboring gene ncRNA Neighboring gene SNF2 domain-containing protein / helicase domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003071.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Chimeric IDD4 Repressor Constitutively Induces Immunity in Arabidopsis via the Modulation of Salicylic Acid and Jasmonic Acid Homeostasis. Vï Lz R, et al. Plant Cell Physiol, 2019 Jul 1. PMID 30989238
  2. INDETERMINATE-DOMAIN 4 (IDD4) coordinates immune responses with plant-growth in Arabidopsis thaliana. Völz R, et al. PLoS Pathog, 2019 Jan. PMID 30677094, Free PMC Article
  3. Transcriptional control of tissue formation throughout root development. Moreno-Risueno MA, et al. Science, 2015 Oct 23. PMID 26494755, Free PMC Article
  4. DELLA protein functions as a transcriptional activator through the DNA binding of the indeterminate domain family proteins. Yoshida H, et al. Proc Natl Acad Sci U S A, 2014 May 27. PMID 24821766, Free PMC Article
  5. Large-scale identification of gibberellin-related transcription factors defines group VII ETHYLENE RESPONSE FACTORS as functional DELLA partners. Marín-de la Rosa N, et al. Plant Physiol, 2014 Oct. PMID 25118255, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Induces Immunity via the Modulation of Salicylic Acid and Jasmonic Acid Homeostasis
    Title: A Chimeric IDD4 Repressor Constitutively Induces Immunity in Arabidopsis via the Modulation of Salicylic Acid and Jasmonic Acid Homeostasis.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001124782.1
NM_001335092.1
NM_001335093.1
NM_001335094.1
NM_001335095.1
NM_126269.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IDA
Inferred from Direct Assay
more info
 PubMed 
enables DNA-binding transcription factor activity IMP
Inferred from Mutant Phenotype
more info
 PubMed 
enables DNA-binding transcription factor activity ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables sequence-specific DNA binding IDA
Inferred from Direct Assay
more info
 PubMed 
Process Evidence Code Pubs
acts_upstream_of_or_within asymmetric cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within pattern recognition receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IDA
Inferred from Direct Assay
more info
 PubMed 
acts_upstream_of_or_within root development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
indeterminate(ID)-domain 4
NP_001318178.1
  • indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
NP_178317.2
  • indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 51298 Blast hits to 20221 proteins in 333 species: Archae - 2; Bacteria - 165; Metazoa - 48118; Fungi - 358; Plants - 855; Viruses - 7; Other Eukaryotes - 1793 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003071.7 Reference assembly

    Range
    518079..521737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_126269.3 → NP_178317.2  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_178317.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYC1, Q9ZUL4
    UniProtKB/TrEMBL
    A0A7G2E7Y3
    Conserved Domains (3) summary
    sd00017
    Location:85 → 105
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:188 → 204
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13912
    Location:82 → 105
    zf-C2H2_6; C2H2-type zinc finger

  2. NM_001335093.1 → NP_001325406.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYC1, Q9ZUL4
    UniProtKB/TrEMBL
    A0A7G2E7Y3

  3. NM_001335094.1 → NP_001325405.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYC1, Q9ZUL4
    UniProtKB/TrEMBL
    A0A7G2E7Y3

  4. NM_001124782.1 → NP_001118254.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_001118254.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ER97
    Conserved Domains (2) summary
    sd00017
    Location:8 → 28
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:111 → 127
    ZF_C2H2; C2H2 Zn finger [structural motif]

  5. NM_001335092.1 → NP_001318178.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A654ER97

  6. NM_001335095.1 → NP_001325407.1  indeterminate(ID)-domain 4 [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8GYC1, Q9ZUL4
    UniProtKB/TrEMBL
    A0A7G2E7Y3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8GYC1.1

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