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LOC8085252 transcription factor bHLH74 [ Sorghum bicolor (sorghum) ]

Gene ID: 8085252, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8085252
Gene description
transcription factor bHLH74
Locus tag
SORBI_3001G447800
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8085252 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (72515580..72519476, complement)

Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene squalene monooxygenase Neighboring gene protein SHORT HYPOCOTYL IN WHITE LIGHT 1 Neighboring gene F-box protein SKIP22 Neighboring gene AP2-like ethylene-responsive transcription factor ANT

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH74

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    72515580..72519476 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021461910.1 → XP_021317585.1  transcription factor bHLH74 isoform X1

    UniProtKB/TrEMBL
    A0A921S7S0, C5WRR2
    Conserved Domains (1) summary
    cd18919
    Location:120 → 203
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  2. XM_021461919.1 → XP_021317594.1  transcription factor bHLH74 isoform X3

    Conserved Domains (1) summary
    smart00353
    Location:126 → 175
    HLH; helix loop helix domain

  3. XM_021461913.1 → XP_021317588.1  transcription factor bHLH74 isoform X2

    Conserved Domains (1) summary
    smart00353
    Location:128 → 177
    HLH; helix loop helix domain

  4. XM_002468179.2 → XP_002468224.2  transcription factor bHLH74 isoform X1

    UniProtKB/TrEMBL
    A0A921S7S0, C5WRR2
    Conserved Domains (1) summary
    cd18919
    Location:120 → 203
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins

  5. XM_021461905.1 → XP_021317580.1  transcription factor bHLH74 isoform X1

    UniProtKB/TrEMBL
    A0A921S7S0, C5WRR2
    Conserved Domains (1) summary
    cd18919
    Location:120 → 203
    bHLH_AtBPE_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana BIG PETAL (BPE) and similar proteins
Nucleotide Protein
Heading Accession and Version

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