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LOC8082122 cyclic dof factor 1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8082122, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8082122
Gene description
cyclic dof factor 1
Locus tag
SORBI_3001G489900
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8082122 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (76000120..76002878, complement)

Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene protoheme IX farnesyltransferase, mitochondrial Neighboring gene uncharacterized LOC8082121 Neighboring gene probable mannan synthase 4 Neighboring gene transfer RNA leucine (anticodon CAG)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclic dof factor 1
Names
Dof-type zinc finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    76000120..76002878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002468383.2 → XP_002468428.1  cyclic dof factor 1 isoform X1

    See identical proteins and their annotated locations for XP_002468428.1

    UniProtKB/TrEMBL
    A0A921V2S6, C5WWR6
    Conserved Domains (1) summary
    pfam02701
    Location:97 → 153
    zf-Dof; Dof domain, zinc finger

  2. XM_021451229.1 → XP_021306904.1  cyclic dof factor 1 isoform X2

    Conserved Domains (1) summary
    pfam02701
    Location:81 → 137
    zf-Dof; Dof domain, zinc finger
Nucleotide Protein
Heading Accession and Version

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