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LOC8080833 homeobox-DDT domain protein RLT2 [ Sorghum bicolor (sorghum) ]

Gene ID: 8080833, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8080833
Gene description
homeobox-DDT domain protein RLT2
Locus tag
SORBI_3003G252100
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8080833 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (59015005..59033321)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 73 Neighboring gene uncharacterized LOC110433736 Neighboring gene pentatricopeptide repeat-containing protein At5g46100 Neighboring gene universal stress protein A-like protein Neighboring gene uncharacterized LOC110433855 Neighboring gene uncharacterized LOC110434068

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-DDT domain protein RLT2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    59015005..59033321
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021457355.1 → XP_021313030.1  homeobox-DDT domain protein RLT2 isoform X1

    UniProtKB/TrEMBL
    A0A1B6Q591, A0A1W0VYW7, A0A921REY8
    Conserved Domains (6) summary
    pfam00046
    Location:57 → 111
    Homeobox; Homeobox domain
    pfam02791
    Location:633 → 688
    DDT; DDT domain
    pfam05066
    Location:807 → 875
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    pfam13868
    Location:431 → 586
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:1032 → 1073
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:1197 → 1268
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

  2. XM_021457356.1 → XP_021313031.1  homeobox-DDT domain protein RLT2 isoform X2

    UniProtKB/TrEMBL
    A0A1W0VYW7, A0A921RFY0
    Conserved Domains (5) summary
    pfam02791
    Location:395 → 450
    DDT; DDT domain
    pfam05066
    Location:569 → 637
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    pfam13868
    Location:193 → 348
    TPH; Trichohyalin-plectin-homology domain
    pfam15612
    Location:794 → 835
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:959 → 1030
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif

  3. XM_021457357.1 → XP_021313032.1  homeobox-DDT domain protein RLT2 isoform X3

    UniProtKB/TrEMBL
    A0A1W0VYV3, A0A1W0VYW7
    Conserved Domains (5) summary
    pfam02791
    Location:356 → 408
    DDT; DDT domain
    pfam05066
    Location:527 → 595
    HARE-HTH; HB1, ASXL, restriction endonuclease HTH domain
    pfam15612
    Location:748 → 793
    WHIM1; WSTF, HB1, Itc1p, MBD9 motif 1
    pfam15613
    Location:917 → 988
    WSD; Williams-Beuren syndrome DDT (WSD), D-TOX E motif
    cl25742
    Location:151 → 306
    ERM; Ezrin/radixin/moesin family
Nucleotide Protein
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