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LOC8079826 cell division cycle 5-like protein [ Sorghum bicolor (sorghum) ]

Gene ID: 8079826, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8079826
Gene description
cell division cycle 5-like protein
Locus tag
SORBI_3003G409900
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8079826 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (71733211..71739884, complement)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene NAC domain-containing protein 83 Neighboring gene uncharacterized LOC110433776 Neighboring gene uncharacterized LOC8059384 Neighboring gene uncharacterized LOC110433523 Neighboring gene probable serine/threonine-protein kinase At1g54610

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cell division cycle 5-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    71733211..71739884 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002458967.2 → XP_002459012.1  cell division cycle 5-like protein

    See identical proteins and their annotated locations for XP_002459012.1

    UniProtKB/TrEMBL
    A0A1B6Q7Y3, A0A921RK31, C5XGY3
    Conserved Domains (3) summary
    COG5147
    Location:1 → 231
    REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
    pfam11831
    Location:406 → 658
    Myb_Cef; pre-mRNA splicing factor component
    cl25732
    Location:682 → 862
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
Heading Accession and Version

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