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LOC8078076 probable transcription factor GLK2 [ Sorghum bicolor (sorghum) ]

Gene ID: 8078076, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8078076
Gene description
probable transcription factor GLK2
Locus tag
SORBI_3003G002600
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8078076 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (302694..310420)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene triose phosphate/phosphate translocator, chloroplastic Neighboring gene dnaJ homolog subfamily B member 1 Neighboring gene DDB1- and CUL4-associated factor 13 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 6, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable transcription factor GLK2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    302694..310420
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021456623.1 → XP_021312298.1  probable transcription factor GLK2 isoform X1

    UniProtKB/TrEMBL
    A0A921R9D0
    Conserved Domains (1) summary
    PLN03162
    Location:195 → 484
    PLN03162; golden-2 like transcription factor; Provisional

  2. XM_002454823.2 → XP_002454868.2  probable transcription factor GLK2 isoform X2

    UniProtKB/TrEMBL
    A0A921R8M7, C5XJI7
    Conserved Domains (1) summary
    PLN03162
    Location:142 → 482
    PLN03162; golden-2 like transcription factor; Provisional
Nucleotide Protein
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