U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8077539 uncharacterized LOC8077539 [ Sorghum bicolor (sorghum) ]

Gene ID: 8077539, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC8077539
Gene description
uncharacterized LOC8077539
Locus tag
SORBI_3003G000800
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC8077539 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 3 NC_012872.2 (111789..114113)

Chromosome 3 - NC_012872.2Genomic Context describing neighboring genes Neighboring gene WRKY transcription factor 6 Neighboring gene AT-hook motif nuclear-localized protein 16 Neighboring gene glucan endo-1,3-beta-D-glucosidase Neighboring gene uncharacterized LOC8077541

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012872.2 Chromosome 3 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC8077539

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012872.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    111789..114113
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002454817.2 → XP_002454862.1  uncharacterized protein LOC8077539

    See identical proteins and their annotated locations for XP_002454862.1

    UniProtKB/TrEMBL
    A0A921R931, C5XJG9
    Conserved Domains (1) summary
    pfam02042
    Location:20 → 67
    RWP-RK; RWP-RK domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials