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LOC8075661 transcription factor TEOSINTE BRANCHED 1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8075661, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8075661
Gene description
transcription factor TEOSINTE BRANCHED 1
Locus tag
SORBI_3007G135700
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8075661 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 7 NC_012876.2 (56156173..56157257)

Chromosome 7 - NC_012876.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110437114 Neighboring gene MADS-box transcription factor 23 Neighboring gene spidroin-1-like Neighboring gene ATP-dependent Clp protease adapter protein CLPS1, chloroplastic Neighboring gene transcription factor AIG1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012876.2 Chromosome 7 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of secondary shoot formation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor TEOSINTE BRANCHED 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012876.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    56156173..56157257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002444342.2 → XP_002444387.1  transcription factor TEOSINTE BRANCHED 1

    See identical proteins and their annotated locations for XP_002444387.1

    UniProtKB/TrEMBL
    A0A921U9S2, C5YL71
    Conserved Domains (1) summary
    cl23822
    Location:78 → 186
    TCP; TCP family transcription factor
Nucleotide Protein
Heading Accession and Version

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