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LOC8075156 homeobox-leucine zipper protein HOX24 [ Sorghum bicolor (sorghum) ]

Gene ID: 8075156, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8075156
Gene description
homeobox-leucine zipper protein HOX24
Locus tag
SORBI_3004G300300
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8075156 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (63901921..63903311)

Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene ATP-dependent zinc metalloprotease FTSH 7, chloroplastic Neighboring gene embryogenesis-associated protein EMB8 Neighboring gene uncharacterized LOC110435016 Neighboring gene trihelix transcription factor GTL1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HOX24

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    63901921..63903311
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002452793.2 → XP_002452838.1  homeobox-leucine zipper protein HOX24

    See identical proteins and their annotated locations for XP_002452838.1

    UniProtKB/TrEMBL
    A0A921R6Y0, C5XS34
    Conserved Domains (2) summary
    pfam00046
    Location:56 → 106
    Homeobox; Homeobox domain
    pfam02183
    Location:108 → 149
    HALZ; Homeobox associated leucine zipper
Nucleotide Protein
Heading Accession and Version

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