U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8073221 zinc finger CCCH domain-containing protein 17 [ Sorghum bicolor (sorghum) ]

Gene ID: 8073221, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC8073221
Gene description
zinc finger CCCH domain-containing protein 17
Locus tag
SORBI_3004G283000
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC8073221 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
9
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 4 NC_012873.2 (62474993..62481031, complement)

Chromosome 4 - NC_012873.2Genomic Context describing neighboring genes Neighboring gene protein HOTHEAD Neighboring gene SPX domain-containing membrane protein Os02g45520 Neighboring gene uncharacterized LOC8073222 Neighboring gene dehydration-responsive element-binding protein 1G

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012873.2 Chromosome 4 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger CCCH domain-containing protein 17

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012873.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    62474993..62481031 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002454438.2 → XP_002454483.1  zinc finger CCCH domain-containing protein 17

    See identical proteins and their annotated locations for XP_002454483.1

    UniProtKB/TrEMBL
    A0A921R7H9, C5Y0Z7
    Conserved Domains (3) summary
    smart00356
    Location:107 → 130
    ZnF_C3H1; zinc finger
    sd00039
    Location:149 → 184
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:142 → 422
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials