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LOC8069671 nuclear transcription factor Y subunit B-11 [ Sorghum bicolor (sorghum) ]

Gene ID: 8069671, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8069671
Gene description
nuclear transcription factor Y subunit B-11
Locus tag
SORBI_3007G059500
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8069671 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 7 NC_012876.2 (6219135..6220291, complement)

Chromosome 7 - NC_012876.2Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110436918 Neighboring gene phenolic glucoside malonyltransferase 1 Neighboring gene LRR receptor kinase BAK1 Neighboring gene CRS2-associated factor 1, mitochondrial Neighboring gene uncharacterized LOC110436947

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012876.2 Chromosome 7 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription activator activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CCAAT-binding factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nuclear transcription factor Y subunit B-11

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012876.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    6219135..6220291 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002445097.2 → XP_002445142.1  nuclear transcription factor Y subunit B-11

    See identical proteins and their annotated locations for XP_002445142.1

    UniProtKB/TrEMBL
    A0A921QJG0, C5YHV2
    Conserved Domains (1) summary
    pfam00808
    Location:62 → 127
    CBFD_NFYB_HMF; Histone-like transcription factor (CBF/NF-Y) and archaeal histone
Nucleotide Protein
Heading Accession and Version

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