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LOC8069197 basic leucine zipper 23 [ Sorghum bicolor (sorghum) ]

Gene ID: 8069197, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8069197
Gene description
basic leucine zipper 23
Locus tag
SORBI_3010G267500
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8069197 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 10 NC_012879.2 (60224592..60228854, complement)

Chromosome 10 - NC_012879.2Genomic Context describing neighboring genes Neighboring gene thaumatin-like protein 1b Neighboring gene endoplasmin homolog Neighboring gene senescence/dehydration-associated protein At3g51250 Neighboring gene uncharacterized LOC110431001

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012879.2 Chromosome 10 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
basic leucine zipper 23

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012879.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    60224592..60228854 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021449388.1 → XP_021305063.1  basic leucine zipper 23

    UniProtKB/TrEMBL
    A0A921U322, C5Z1W5
    Conserved Domains (2) summary
    smart00338
    Location:100 → 159
    BRLZ; basic region leucin zipper
    cd14686
    Location:106 → 153
    bZIP; coiled coil [structural motif]

  2. XM_002438986.2 → XP_002439031.1  basic leucine zipper 23

    See identical proteins and their annotated locations for XP_002439031.1

    UniProtKB/TrEMBL
    A0A921U322, C5Z1W5
    Conserved Domains (2) summary
    smart00338
    Location:100 → 159
    BRLZ; basic region leucin zipper
    cd14686
    Location:106 → 153
    bZIP; coiled coil [structural motif]
Nucleotide Protein
Heading Accession and Version

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