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LOC8068214 transcription factor SRM1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8068214, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8068214
Gene description
transcription factor SRM1
Locus tag
SORBI_3009G039100
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8068214 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 9 NC_012878.2 (3680990..3682328, complement)

Chromosome 9 - NC_012878.2Genomic Context describing neighboring genes Neighboring gene mitogen-activated protein kinase 14-like Neighboring gene transcription factor SRM1 Neighboring gene uncharacterized LOC8068215 Neighboring gene uncharacterized LOC110429984

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012878.2 Chromosome 9 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor SRM1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012878.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    3680990..3682328 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002440521.2 → XP_002440566.1  transcription factor SRM1

    See identical proteins and their annotated locations for XP_002440566.1

    UniProtKB/TrEMBL
    A0A921QAG1, C5YZP0
    Conserved Domains (1) summary
    cl21498
    Location:137 → 189
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
Nucleotide Protein
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