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LOC8065464 protein SAWADEE HOMEODOMAIN HOMOLOG 2 [ Sorghum bicolor (sorghum) ]

Gene ID: 8065464, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8065464
Gene description
protein SAWADEE HOMEODOMAIN HOMOLOG 2
Locus tag
SORBI_3002G165800
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8065464 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (51703535..51710152, complement)

Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene ethylene-responsive transcription factor ERF119 Neighboring gene pathogenesis-related genes transcriptional activator PTI6 Neighboring gene uncharacterized LOC110432712 Neighboring gene uncharacterized LOC110433059

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein SAWADEE HOMEODOMAIN HOMOLOG 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    51703535..51710152 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021454415.1 → XP_021310090.1  protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1

    UniProtKB/TrEMBL
    A0A1W0W4J2
    Conserved Domains (2) summary
    smart00389
    Location:14 → 76
    HOX; Homeodomain
    pfam16719
    Location:136 → 277
    SAWADEE; SAWADEE domain

  2. XM_002462125.2 → XP_002462170.1  protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2

    See identical proteins and their annotated locations for XP_002462170.1

    UniProtKB/TrEMBL
    A0A921RN90, C5X934
    Conserved Domains (2) summary
    smart00389
    Location:14 → 76
    HOX; Homeodomain
    pfam16719
    Location:135 → 261
    SAWADEE; SAWADEE domain
Nucleotide Protein
Heading Accession and Version

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