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LOC8064490 transcription factor bHLH85 [ Sorghum bicolor (sorghum) ]

Gene ID: 8064490, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8064490
Gene description
transcription factor bHLH85
Locus tag
SORBI_3001G166700
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8064490 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (13855353..13856632)

Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene probable 2-oxoglutarate-dependent dioxygenase At5g05600 Neighboring gene probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic Neighboring gene uncharacterized LOC110431965 Neighboring gene uncharacterized LOC110437555

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor bHLH85

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    13855353..13856632
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002464182.1 → XP_002464227.1  transcription factor bHLH85

    See identical proteins and their annotated locations for XP_002464227.1

    UniProtKB/TrEMBL
    A0A921RZA2, C5WSA8
    Conserved Domains (1) summary
    cd11454
    Location:217 → 279
    bHLH_AtIND_like; basic helix-loop-helix (bHLH) domain found in Arabidopsis thaliana protein INDEHISCENT (IND) and similar proteins
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials