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LOC8062073 homeobox-leucine zipper protein HOX6 [ Sorghum bicolor (sorghum) ]

Gene ID: 8062073, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8062073
Gene description
homeobox-leucine zipper protein HOX6
Locus tag
SORBI_3002G272900
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8062073 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 2 NC_012871.2 (65616918..65618605, complement)

Chromosome 2 - NC_012871.2Genomic Context describing neighboring genes Neighboring gene cytochrome P450 78A9 Neighboring gene mediator of RNA polymerase II transcription subunit 10b Neighboring gene EIN3-binding F-box protein 2-like Neighboring gene 30S ribosomal protein S31, mitochondrial

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012871.2 Chromosome 2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
homeobox-leucine zipper protein HOX6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012871.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    65616918..65618605 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002462665.2 → XP_002462710.1  homeobox-leucine zipper protein HOX6

    See identical proteins and their annotated locations for XP_002462710.1

    UniProtKB/TrEMBL
    A0A921UWT9, C5X657
    Conserved Domains (2) summary
    pfam00046
    Location:36 → 86
    Homeobox; Homeobox domain
    pfam02183
    Location:88 → 130
    HALZ; Homeobox associated leucine zipper
Nucleotide Protein
Heading Accession and Version

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Research Materials