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LOC8060849 heat stress transcription factor A-1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8060849, updated on 22-Oct-2023

Summary

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Gene symbol
LOC8060849
Gene description
heat stress transcription factor A-1
Locus tag
SORBI_3001G007200
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Genomic context

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See LOC8060849 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (718251..722282, complement)

Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene phosphoglycolate phosphatase 2 Neighboring gene uncharacterized LOC8060848 Neighboring gene protein NUCLEAR FUSION DEFECTIVE 2 Neighboring gene RNA-binding protein 34

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat stress transcription factor A-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    718251..722282 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002466031.2 → XP_002466076.1  heat stress transcription factor A-1

    See identical proteins and their annotated locations for XP_002466076.1

    UniProtKB/TrEMBL
    A0A921RUU9, C5WRZ8
    Conserved Domains (2) summary
    smart00415
    Location:49 → 138
    HSF; heat shock factor
    pfam12325
    Location:169 → 218
    TMF_TATA_bd; TATA element modulatory factor 1 TATA binding
Nucleotide Protein
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