U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC8058064 trihelix transcription factor ASIL1 [ Sorghum bicolor (sorghum) ]

Gene ID: 8058064, updated on 22-Oct-2023

Summary

Go to the top of the page Help
Gene symbol
LOC8058064
Gene description
trihelix transcription factor ASIL1
Locus tag
SORBI_3001G294700
Gene type
protein coding
RefSeq status
MODEL
Organism
Sorghum bicolor
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC8058064 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
1
Annotation release Status Assembly Chr Location
101 current Sorghum_bicolor_NCBIv3 (GCF_000003195.3) 1 NC_012870.2 (57346640..57348403, complement)

Chromosome 1 - NC_012870.2Genomic Context describing neighboring genes Neighboring gene phospho-2-dehydro-3-deoxyheptonate aldolase 2, chloroplastic Neighboring gene polyadenylate-binding protein 1 Neighboring gene mediator of RNA polymerase II transcription subunit 31 Neighboring gene RNA-binding KH domain-containing protein PEPPER

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_012870.2 Chromosome 1 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transcription cis-regulatory region binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
trihelix transcription factor ASIL1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sorghum bicolor Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sorghum_bicolor_NCBIv3 Primary Assembly

Genomic

  1. NC_012870.2 Reference Sorghum_bicolor_NCBIv3 Primary Assembly

    Range
    57346640..57348403 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002467428.2 → XP_002467473.1  trihelix transcription factor ASIL1

    See identical proteins and their annotated locations for XP_002467473.1

    UniProtKB/TrEMBL
    C5WRH0
    Conserved Domains (1) summary
    pfam13837
    Location:57 → 143
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials